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Platform GPL34479 Query DataSets for GPL34479
Status Public on May 18, 2024
Title GeoChip 5.0 (60k)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism wastewater metagenome
Manufacturer Agilent
Manufacture protocol http://ieg.ou.edu/protocol.htm
 
 
Submission date May 15, 2024
Last update date May 18, 2024
Contact name Yarong Liu
E-mail(s) L2576732497@126.com
Phone 13546424671
Organization name Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences
Department Aquaculture and Nutrition Research Lab
Street address No. 1 Xingyu Road
City Guangzhou
State/province Guangzhou/Guangdong
ZIP/Postal code 510380
Country China
 
Samples (6) GSM8268424, GSM8268425, GSM8268426, GSM8268427, GSM8268428, GSM8268429
Series (1)
GSE267540 Microorganism-mediated denitrogenation of aquaculture systems provoked by poly-β-hydroxybutyrate (PHB)

Data table header descriptions
ID
GI GenBank accession number of gene
gene The name of gene detected
Gene category The categories according to gene functions
Sub-category1 coarse division of gene cate
subcategory2
Organism The organism the gene derives from
lineage The phylogenetic information of organism

Data table
ID GI gene Gene category Sub-category1 subcategory2 Organism lineage
37222160 37222160 beta_agarase Carbon Cycling Carbon degradation Agar uncultured bacterium superkingdom:Bacteria;
37222161 37222161 beta_agarase Carbon Cycling Carbon degradation Agar uncultured bacterium superkingdom:Bacteria;
90426095 90426095 beta_agarase Carbon Cycling Carbon degradation Agar Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris;
115526609 115526609 beta_agarase Carbon Cycling Carbon degradation Agar Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris;
91683347 91683347 beta_agarase Carbon Cycling Carbon degradation Agar Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris;
110225195 110225195 beta_agarase Carbon Cycling Carbon degradation Agar Alteromonas sp. E-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;
332307308 332307308 beta_agarase Carbon Cycling Carbon degradation Agar Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;
332173334 332173334 beta_agarase Carbon Cycling Carbon degradation Agar Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;
37665541 37665541 beta_agarase Carbon Cycling Carbon degradation Agar Microbulbifer elongatus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;
372268833 372268833 beta_agarase Carbon Cycling Carbon degradation Agar Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus;
333116788 333116788 beta_agarase Carbon Cycling Carbon degradation Agar Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva;
115551736 115551736 beta_agarase Carbon Cycling Carbon degradation Agar Vibrio sp. PO-303 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;
372474454 372474454 beta_agarase Carbon Cycling Carbon degradation Agar Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;
372476103 372476103 beta_agarase Carbon Cycling Carbon degradation Agar Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;
372471993 372471993 beta_agarase Carbon Cycling Carbon degradation Agar Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;
294054147 294054147 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis;
293613363 293613363 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis;
322437661 322437661 alginase Carbon Cycling Carbon degradation Alginate Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;
320105503 320105503 alginase Carbon Cycling Carbon degradation Alginate Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis;
320106025 320106025 alginase Carbon Cycling Carbon degradation Alginate Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis;

Total number of rows: 15864

Table truncated, full table size 3544 Kbytes.




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