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Status
Public on Oct 02, 2020
Title
Illumina HumanHT-12 V4.0 expression beadchip [HumanHT-12_V4_0_R0_15002873_4.bgx]
Technology type
oligonucleotide beads
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Illumina Inc.
Manufacture protocol
see manufacturer's website
Description
***The annotation table is provided by the submitter and is based on HumanHT-12_V4_0_R0_15002873_4.bgx
Submission date
Jan 30, 2020
Last update date
Oct 02, 2020
Contact name
Supriyo De
Organization name
NIA-IRP, NIH
Department
Laboratory of Genetics and Genomics
Lab
Computational Biology & Genomics Core
Street address
251 Bayview Blvd
City
Baltimore
State/province
Maryland
ZIP/Postal code
21224
Country
USA
Samples (120)
GSM4290826 , GSM4290827 , GSM4290828 , GSM4290829 , GSM4290830 , GSM4290831
GSM4290832 ,
GSM4290833 ,
GSM4290834 ,
GSM4290835 ,
GSM4290836 ,
GSM4290837 ,
GSM4494979 ,
GSM4494980 ,
GSM4494981 ,
GSM4494982 ,
GSM4494983 ,
GSM4494984 ,
GSM4494985 ,
GSM4494986 ,
GSM4494987 ,
GSM4494988 ,
GSM4494989 ,
GSM4494990 ,
GSM4494991 ,
GSM4494992 ,
GSM4494993 ,
GSM4494994 ,
GSM4494995 ,
GSM4494996 ,
GSM4494997 ,
GSM4494998 ,
GSM4494999 ,
GSM4495000 ,
GSM4495001 ,
GSM4495002 ,
GSM4495003 ,
GSM4495004 ,
GSM4495005 ,
GSM4495006 ,
GSM4495007 ,
GSM4495008 ,
GSM4495009 ,
GSM4495010 ,
GSM4495011 ,
GSM4495012 ,
GSM4495013 ,
GSM4495014 ,
GSM4495015 ,
GSM4495016 ,
GSM4495017 ,
GSM4495018 ,
GSM4495019 ,
GSM4495020 ,
GSM4495021 ,
GSM4495022 ,
GSM4495023 ,
GSM4495024 ,
GSM4495025 ,
GSM4495026 ,
GSM4495027 ,
GSM4495028 ,
GSM4495029 ,
GSM4495030 ,
GSM7976778 ,
GSM7976779 ,
GSM7976780 ,
GSM7976781 ,
GSM7976782 ,
GSM7976783 ,
GSM7976784 ,
GSM7976785 ,
GSM7976786 ,
GSM7976787 ,
GSM7976788 ,
GSM7976789 ,
GSM7976790 ,
GSM7976791 ,
GSM7976792 ,
GSM7976793 ,
GSM7976794 ,
GSM7976795 ,
GSM7976796 ,
GSM7976797 ,
GSM7976798 ,
GSM7976799 ,
GSM7976800 ,
GSM7976801 ,
GSM7976802 ,
GSM7976803 ,
GSM7976804 ,
GSM7976805 ,
GSM7976806 ,
GSM7976807 ,
GSM7976808 ,
GSM7976809 ,
GSM7976810 ,
GSM7976811 ,
GSM7976812 ,
GSM7976813 ,
GSM7976814 ,
GSM7976815 ,
GSM7976816 ,
GSM7976817 ,
GSM7976818 ,
GSM7976819 ,
GSM7976820 ,
GSM7976821 ,
GSM7976822 ,
GSM7976823 ,
GSM7976824 ,
GSM7976825 ,
GSM7976826 ,
GSM7976827 ,
GSM7976828 ,
GSM7976829 ,
GSM7976830 ,
GSM7976831 ,
GSM7976832 ,
GSM7976833
Series (4)
GSE144557
Cockayne syndrome proteins CSA and CSB maintain mitochondrial homeostasis through NAD+ signaling [HumanHT-12 V4.0]
GSE144558
Cockayne syndrome proteins CSA and CSB maintain mitochondrial homeostasis through NAD+ signaling
GSE149256
The Association between Poverty and Gene Expression within Immune Cells in a Diverse Baltimore City Cohort
GSE250283
Transcriptional profiles associated with coronary artery disease in Type 2 diabetes mellitus
Relations
Alternative to
GPL10558 (official)
Data table header descriptions
ID
PROBE_ID
ARRAY_ADDRESS_ID
Decoder id
TRANSCRIPT
Internal transcript id
ILMN_GENE
Internal gene symbol
PA_Call
TARGETID
SPECIES
SOURCE
Transcript sequence source name
SEARCH_KEY
Internal id useful for custom design array
SOURCE_REFERENCE_ID
Id in the source database
REFSEQ_ID
Refseq id
UNIGENE_ID
Unigene id
ENTREZ_GENE_ID
Entrez gene id
GI
Genbank id
ACCESSION
Genbank accession number
SYMBOL
Gene symbol from the source database
PROTEIN_PRODUCT
Genbank protein accession number
PROBE_TYPE
Information about what this probe is targeting
PROBE_START
Position of the probe relative to the 5' of the source transcript sequence
SEQUENCE
Probe sequence
CHROMOSOME
PROBE_CHR_ORIENTATION
Orientation on the NCBI genome built
PROBE_COORDINATES
genomic position of the probe on the NCBI genome build 36 version 3
CYTOBAND
DEFINITION
GGene description from the sourceene description from the source
ONTOLOGY_COMPONENT
Cellular component annotations from Gene Ontology project
ONTOLOGY_PROCESS
Biological process annotations from Gene Ontology project
ONTOLOGY_FUNCTION
Molecular function annotations from Gene Ontology project
SYNONYMS
Gene symbol synonyms from Refseq
OBSOLETE_PROBE_ID
Identifier of probe id before bgx time
GB_ACC
Data table
ID
ARRAY_ADDRESS_ID
TRANSCRIPT
ILMN_GENE
PA_Call
TARGETID
SPECIES
SOURCE
SEARCH_KEY
SOURCE_REFERENCE_ID
REFSEQ_ID
UNIGENE_ID
ENTREZ_GENE_ID
GI
ACCESSION
SYMBOL
PROTEIN_PRODUCT
PROBE_TYPE
PROBE_START
SEQUENCE
CHROMOSOME
PROBE_CHR_ORIENTATION
PROBE_COORDINATES
CYTOBAND
DEFINITION
ONTOLOGY_COMPONENT
ONTOLOGY_PROCESS
ONTOLOGY_FUNCTION
SYNONYMS
OBSOLETE_PROBE_ID
GB_ACC
ILMN_1343061
2900397
ILMN_160461
CY3_HYB:HIGH_1_MM2
1
CY3_HYB:HIGH_1_MM2
ILMN Controls
ILMN_Controls
cy3_hyb:high_1_mm2
cy3_hyb:high_1_mm2
cy3_hyb:high_1_mm2
cy3_hyb:high_1_mm2
S
1
AATTAAAACGATGCACTCAGGGTTTAGCGCGTAGACGTATTGCATTATGC
ILMN_1343291
3450719
ILMN_137991
EEF1A1
1
EEF1A1
Homo sapiens
RefSeq
NM_001402.4
NM_001402.4
NM_001402.4
1915
25453469
NM_001402.4
EEF1A1
NP_001393.1
S
1293
TGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCG
6
-
74284362-74284378:74284474-74284506
6q13c
Homo sapiens eukaryotic translation elongation factor 1 alpha 1 (EEF1A1)
mRNA.
All of the contents of a cell excluding the plasma membrane and nucleus
but including other subcellular structures [goid 5737] [evidence NAS]
The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein [goid 6412] [evidence IEA]; The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [pmid 3570288] [evidence NAS]
Interacting selectively with a nucleotide
NM_001402.4
ILMN_1343295
4490161
ILMN_137405
GAPDH
1
GAPDH
Homo sapiens
RefSeq
NM_002046.2
NM_002046.2
2597
7669491
NM_002046.2
GAPDH
NP_002037.2
S
930
CTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTGGGGCTGGCATTG
12
+
6517340-6517389
12p13.31d
Homo sapiens glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
mRNA.
All of the contents of a cell excluding the plasma membrane and nucleus
but including other subcellular structures [goid 5737] [evidence NAS]
The chemical reactions and pathways involving glucose
the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides [goid 6006] [evidence IEA]; The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate
NM_002046.2
ILMN_1343321
5390750
ILMN_160027
NEGATIVE_0971
0
NEGATIVE_0971
ILMN Controls
ILMN_Controls
negative_0971
negative_0971
negative_0971
negative_0971
S
1
TCCCTACTGTAAGCTGGAGGGTAGAATGGGGTCGACGGGGCGCTCTTAAT
ILMN_1343339
4780100
ILMN_160401
NEGATIVE_0953
0
NEGATIVE_0953
ILMN Controls
ILMN_Controls
negative_0953
negative_0953
negative_0953
negative_0953
S
1
ACGTGGCGGTGGTGTCCTTCGGTTTTAGTGCATCTCCGTCCTCTTCCCCT
ILMN_1343553
2190427
ILMN_159920
NEGATIVE_0717
0
NEGATIVE_0717
ILMN Controls
ILMN_Controls
negative_0717
negative_0717
negative_0717
negative_0717
S
1
TCCCAGCGGAGCGGTACGCCTGCCTGCCCTAGAGAGTTAAATAGTGGTAA
ILMN_1343567
5910142
ILMN_160278
NEGATIVE_0701
1
NEGATIVE_0701
ILMN Controls
ILMN_Controls
negative_0701
negative_0701
negative_0701
negative_0701
S
1
CTGTTATCCCCCTGCGGCCTTCACGGTGCCTTTCCCCCCTGTCCTACTAT
ILMN_1343638
2490575
ILMN_160247
NEGATIVE_0615
0
NEGATIVE_0615
ILMN Controls
ILMN_Controls
negative_0615
negative_0615
negative_0615
negative_0615
S
1
GCCTGTAGGGGCGGTTGTGCACCTTGCAAGCAAGTAACCCACCTTCTCCC
ILMN_1343668
840193
ILMN_160230
NEGATIVE_0575
0
NEGATIVE_0575
ILMN Controls
ILMN_Controls
negative_0575
negative_0575
negative_0575
negative_0575
S
1
TCTGCGCGCGCGATTACTGACAATCCGCCGCGACAACACCACCTCCAAAG
ILMN_1343782
3060193
ILMN_160180
NEGATIVE_0458
1
NEGATIVE_0458
ILMN Controls
ILMN_Controls
negative_0458
negative_0458
negative_0458
negative_0458
S
1
GAGTGAGGGGGATTGGATCCTAACGTCCTTGGGTGGGCGTACTTGGCTCA
ILMN_1343835
5290731
ILMN_160155
NEGATIVE_0393
0
NEGATIVE_0393
ILMN Controls
ILMN_Controls
negative_0393
negative_0393
negative_0393
negative_0393
S
1
GGGCAAGTTTGCGCAGCTAATGGTCAGGGGGGAGGTACTCTCATGGTCAA
ILMN_1343841
6550192
ILMN_160151
NEGATIVE_0386
0
NEGATIVE_0386
ILMN Controls
ILMN_Controls
negative_0386
negative_0386
negative_0386
negative_0386
S
1
CCTGGTGTCTCTGTCGTCAGGTCCCATCCACAACCTCTTCTTACCCCGAA
ILMN_1343872
2260348
ILMN_160135
NEGATIVE_0354
1
NEGATIVE_0354
ILMN Controls
ILMN_Controls
negative_0354
negative_0354
negative_0354
negative_0354
S
1
GTTAGCGCGGGGGTATAGTGGGTTGGGGCGCTCTTGTGCACTGAAGCACT
ILMN_1343914
160414
ILMN_160112
NEGATIVE_0306
0
NEGATIVE_0306
ILMN Controls
ILMN_Controls
negative_0306
negative_0306
negative_0306
negative_0306
S
1
AGAAGCGAACGACTCGGTGCACAGTTGCGAGAGAGGTGAATTGCGGCGAG
ILMN_1343977
7570392
ILMN_160087
NEGATIVE_0228
0
NEGATIVE_0228
ILMN Controls
ILMN_Controls
negative_0228
negative_0228
negative_0228
negative_0228
S
1
TTCCTGAAGTGCGCCAAGGTGCCGTCACCGTATCTGATGTGTGGTCTCTG
ILMN_1344038
160278
ILMN_160055
NEGATIVE_0151
0
NEGATIVE_0151
ILMN Controls
ILMN_Controls
negative_0151
negative_0151
negative_0151
negative_0151
S
1
CCGCATGCAGATTGTGAGTCTGCGGCGATGTACCGGACGCTCTCGCATTG
ILMN_1344055
5490091
ILMN_159654
NEGATIVE_0070
1
NEGATIVE_0070
ILMN Controls
ILMN_Controls
negative_0070
negative_0070
negative_0070
negative_0070
S
1
GAAGGCGATTGTGGGGCTGAAACGGTGGTGTGATAGGCGAAAAGGGGGTG
ILMN_1344056
3360070
ILMN_159653
NEGATIVE_0069
0
NEGATIVE_0069
ILMN Controls
ILMN_Controls
negative_0069
negative_0069
negative_0069
negative_0069
S
1
GACGGCTCTTTGGTTAGCCGGGGATCTGGTGACTAACATCACCCTCCCTG
ILMN_1651199
1770632
ILMN_45326
LOC643334
0
LOC643334
Homo sapiens
RefSeq
XM_931492.1
XM_931492.1
XM_931492.1
643334
88954077
XM_931492.1
LOC643334
XP_936585.1
S
1
ATGCGAGGCCCCAGGGTTCGGCCCCGCAGCGCCGCTGAGTCCAAGGACCG
2
+
238529557-238529606
2q37.3b
PREDICTED: Homo sapiens hypothetical LOC643334 (LOC643334)
mRNA.
XM_931492.1
ILMN_1651209
2940221
ILMN_8692
SLC35E2
1
SLC35E2
Homo sapiens
RefSeq
NM_182838.1
NM_182838.1
NM_182838.1
9906
33469136
NM_182838.1
SLC35E2
NP_878258.1
S
1103
TCACGGCGTACGCCCTCATGGGGAAAATCTCCCCGGTGACTTTCAGGTCC
1
-
1663958-1663962:1666129-1666173
1p36.33a
Homo sapiens solute carrier family 35
member E2 (SLC35E2)
mRNA.
NM_182838.1
Total number of rows: 47556 Table truncated, full table size 18068 Kbytes .
Supplementary data files not provided