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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 22, 2006 |
| Title |
BCCRC Lam SMRTr array |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Lam Lab, BC Cancer Agency |
| Manufacture protocol |
N/A
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| |
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| Description |
A tiling resolution array of 26, 928 overlapping BAC clones spanning the human genome
Keywords = SMRTr tiling array
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| Web link |
http://www.bccrc.ca/arraycgh/
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| Contributor(s) |
Garnis C, Lockwood WW, Lam WL |
| Citation(s) |
14981516 |
| Submission date |
Jul 10, 2005 |
| Last update date |
Dec 12, 2007 |
| Contact name |
William Wallace Lockwood |
| E-mail(s) |
william.lockwood@nih.gov
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| Organization name |
National Human Genome Research Institute
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| Street address |
50 South Drive
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Samples (596)
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GSM63348, GSM63349, GSM63350, GSM63351, GSM102745, GSM102750
GSM102751, GSM102752, GSM102754, GSM102759, GSM102762, GSM102764, GSM102765, GSM102766, GSM102767, GSM102768, GSM102769, GSM102770, GSM102771, GSM102772, GSM102773, GSM102774, GSM102775, GSM102776, GSM102777, GSM102778, GSM102779, GSM102780, GSM102781, GSM113860, GSM113861, GSM113862, GSM113863, GSM113864, GSM113865, GSM113866, GSM113867, GSM123874, GSM123875, GSM123876, GSM123877, GSM123878, GSM123879, GSM123880, GSM123881, GSM123882, GSM123883, GSM123884, GSM123885, GSM123886, GSM123887, GSM123888, GSM123889, GSM123890, GSM123891, GSM123892, GSM123893, GSM123894, GSM123895, GSM123896, GSM123897, GSM123898, GSM123899, GSM123900, GSM123901, GSM123902, GSM123903, GSM123904, GSM123905, GSM123906, GSM123907, GSM123908, GSM123909, GSM123910, GSM123911, GSM123912, GSM123913, GSM123914, GSM123915, GSM123916, GSM123917, GSM123918, GSM123919, GSM123920, GSM123921, GSM123922, GSM123923, GSM123924, GSM123925, GSM123926, GSM123927, GSM123928, GSM123929, GSM123930, GSM123931, GSM123932, GSM123933, GSM123934, GSM123935, GSM123936, GSM123937, GSM123938, GSM123939, GSM123940, GSM123941, GSM123942, GSM123943, GSM123944, GSM123945, GSM123946, GSM123947, GSM123948, GSM123949, GSM123950, GSM123951, GSM123952, GSM123953, GSM123954, GSM123955, GSM123956, GSM123957, GSM123958, GSM123959, GSM123960, GSM123961, GSM123962, GSM123963, GSM123964, GSM123965, GSM123966, GSM123967, GSM123968, GSM123969, GSM123970, GSM123971, GSM123972, GSM123973, GSM123974, GSM123975, GSM123976, GSM123977, GSM123978, GSM124434, GSM124436, GSM124438, GSM124440, GSM124441, GSM124443, GSM124444, GSM124445, GSM124447, GSM124448, GSM124449, GSM124450, GSM124451, GSM124452, GSM124454, GSM124455, GSM124456, GSM124457, GSM124458, GSM124459, GSM124462, GSM124463, GSM124464, GSM124465, GSM124466, GSM124467, GSM124534, GSM124535, GSM124536, GSM124537, GSM124538, GSM124539, GSM124540, GSM124541, GSM124542, GSM124543, GSM124544, GSM124545, GSM124546, GSM124547, GSM232080, GSM232081, GSM232082, GSM232083, GSM232084, GSM232085, GSM232086, GSM232087, GSM232088, GSM232089, GSM232090, GSM232091, GSM232092, GSM232093, GSM232094, GSM232095, GSM232096, GSM232097, GSM232098, GSM232099, GSM232100, GSM232101, GSM232102, GSM232103, GSM232104, GSM232105, GSM232106, GSM232107, GSM232108, GSM232109, GSM232110, GSM232111, GSM232112, GSM232113, GSM232114, GSM232115, GSM232116, GSM232117, GSM232118, GSM232119, GSM232120, GSM232121, GSM232122, GSM232123, GSM232124, GSM232125, GSM232126, GSM238814, GSM238836, GSM238859, GSM238866, GSM238869, GSM238876, GSM238878, GSM238879, GSM238880, GSM238936, GSM238937, GSM238938, GSM238939, GSM238940, GSM238967, GSM238974, GSM238975, GSM238976, GSM238977, GSM238978, GSM238979, GSM238980, GSM238981, GSM239517, GSM239518, GSM239519, GSM239521, GSM239522, GSM239523, GSM239524, GSM239525, GSM239526, GSM239527, GSM239528, GSM239529, GSM239530, GSM239531, GSM239532, GSM239533, GSM239534, GSM239535, GSM239536, GSM239537, GSM239562, GSM239563, GSM239564, GSM239565, GSM239566, GSM239576, GSM239579, GSM239581, GSM239582, GSM284808, GSM284809, GSM284810, GSM284811, GSM284812, GSM284813, GSM284814, GSM284815, GSM284816, GSM284817, GSM284818, GSM284819, GSM284820, GSM284821, GSM284822, GSM284823, GSM284824, GSM302263, GSM302264, GSM302265, GSM302266, GSM302267, GSM302268, GSM302269, GSM302270, GSM302271, GSM302272, GSM302273, GSM302274, GSM302275, GSM302276, GSM302277, GSM302280, GSM302281, GSM302282, GSM302283, GSM302284, GSM302285, GSM302286, GSM302287, GSM302288, GSM302289, GSM302290, GSM302291, GSM302292, GSM302293, GSM311020, GSM311021, GSM311022, GSM311023, GSM311024, GSM311025, GSM311026, GSM311027, GSM311028, GSM311029, GSM311030, GSM311031, GSM311032, GSM311033, GSM311034, GSM311035, GSM311036, GSM311037, GSM311038, GSM311039, GSM311040, GSM311041, GSM311042, GSM311043, GSM311044, GSM311045, GSM311046, GSM311047, GSM311048, GSM311049, GSM311050, GSM311051, GSM311052, GSM311053, GSM311054, GSM311055, GSM311056, GSM311057, GSM311058, GSM311059, GSM311060, GSM311061, GSM311062, GSM311063, GSM311064, GSM311065, GSM311066, GSM311067, GSM311068, GSM311069, GSM311070, GSM311071, GSM311072, GSM311073, GSM311074, GSM311075, GSM311076, GSM311077, GSM311078, GSM311079, GSM311080, GSM311081, GSM311082, GSM311083, GSM311084, GSM311085, GSM311086, GSM311087, GSM311088, GSM311089, GSM311090, GSM311091, GSM311092, GSM311093, GSM311094, GSM311095, GSM311096, GSM311097, GSM311098, GSM311099, GSM311100, GSM311101, GSM311102, GSM311103, GSM311104, GSM311105, GSM311106, GSM311107, GSM311108, GSM311109, GSM311110, GSM311111, GSM311112, GSM311113, GSM311114, GSM311115, GSM311116, GSM311117, GSM311118, GSM311119, GSM311120, GSM311121, GSM311122, GSM311123, GSM311124, GSM311125, GSM473616, GSM473617, GSM473618, GSM473619, GSM473620, GSM473621, GSM473622, GSM473623, GSM473624, GSM473625, GSM473626, GSM473627, GSM473628, GSM473629, GSM473630, GSM473631, GSM473632, GSM473633, GSM473634, GSM473635, GSM473636, GSM473637, GSM473638, GSM473639, GSM473640, GSM473641, GSM473642, GSM473643, GSM473644, GSM473645, GSM537968, GSM537969, GSM537970, GSM537971, GSM537972, GSM537973, GSM537974, GSM1009939, GSM1009940, GSM1009941, GSM1009942, GSM1009943, GSM1009944, GSM1009945, GSM1009946, GSM1009947, GSM1009948, GSM1009949, GSM1009950, GSM1009951, GSM1009952, GSM1009953, GSM1009954, GSM1009955, GSM1009956, GSM1009957, GSM1009958, GSM1009959, GSM1009960, GSM1009961, GSM1009962, GSM1009963, GSM1009964, GSM1009965, GSM1009966, GSM1009967, GSM1009968...
Accession list truncated, click here to browse through all related public accessions
You can also download a list of all accessions here
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| Series (13)
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| GSE2922 |
High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH |
| GSE4591 |
High resolution analysis of early lobular neoplastic breast lesions (ALH and LCIS) by whole genome tiling path array CGH |
| GSE5049 |
Whole genome tiling path array CGH analysis of segmental copy number alterations in cervical cancer cells |
| GSE5442 |
A comprehensive analysis of copy number variations in the human genome |
| GSE9193 |
Oral dysplasias and oral squamous cell carcinoma |
| GSE11275 |
Tiling-set aCGH data for oral dysplasias and oral squamous cell carcinomas |
| GSE11945 |
Genomic markers for malignant progression in pulmonary adenocarcinoma. |
| GSE12393 |
Genome-wide profiling of follicular lymphoma by array comparative genomic hybridization |
| GSE13331 |
Prognostic analysis of mantle cell lymphoma genomes |
| GSE19034 |
EYA4 is a non-small cell lung cancer tumor suppressor located in the susceptibility locus on chromosome 6q |
| GSE21540 |
An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer: CGH |
| GSE21541 |
An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer |
| GSE41120 |
Molecular Characterization of 126 Intermediate Risk Prostate Cancer Patient Samples |
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| Data table header descriptions |
| ID |
|
| Locus ID |
Plate and well location of clone |
| Chromosome ID |
Chromosome number of clone |
| bp_start |
Starting position of clone |
| CLONE ID |
FPC number |
| GB_ACC |
GenBank accession numbers , |
| bp_End |
End position of clone |
| SPOT_ID |
spot identifier |
| Data table |
| ID |
Locus ID |
Chromosome ID |
bp_start |
CLONE ID |
GB_ACC |
bp_End |
SPOT_ID |
| 1 |
RO71D12 |
5 |
128936595 |
N0281H09 |
|
129094129 |
FPC number: N0281H09; chr: 5[128936595..129094129] |
| 2 |
RO70P24 |
3 |
150141730 |
N0193G12 |
|
150306394 |
FPC number: N0193G12; chr: 3[150141730..150306394] |
| 3 |
RO70P12 |
X |
84347953 |
N0192B18 |
AL590229 |
84517799 |
FPC number: N0192B18; chr: X[84347953..84517799] |
| 4 |
RO70L24 |
11 |
121098934 |
N0186N22 |
|
121249383 |
FPC number: N0186N22; chr: 11[121098934..121249383] |
| 5 |
RO70L12 |
3 |
197202618 |
N0185G19 |
|
197385976 |
FPC number: N0185G19; chr: 3[197202618..197385976] |
| 6 |
RO70H24 |
5 |
138439637 |
N0181E17 |
|
138596731 |
FPC number: N0181E17; chr: 5[138439637..138596731] |
| 7 |
RO70H12 |
1 |
29645059 |
N0179G08 |
AL645944 |
29836305 |
FPC number: N0179G08; chr: 1[29645059..29836305] |
| 8 |
RO70D24 |
1 |
66460803 |
N0174B10 |
|
66611257 |
FPC number: N0174B10; chr: 1[66460803..66611257] |
| 9 |
RO70D12 |
5 |
54759163 |
N0173I16 |
|
54922166 |
FPC number: N0173I16; chr: 5[54759163..54922166] |
| 10 |
RO69P24 |
2 |
222921566 |
N0085J04 |
|
223071721 |
FPC number: N0085J04; chr: 2[222921566..223071721] |
| 11 |
RO69P12 |
4 |
162851948 |
N0084H19 |
|
163009732 |
FPC number: N0084H19; chr: 4[162851948..163009732] |
| 12 |
RO69L24 |
X |
16523858 |
N0080N06 |
|
16690871 |
FPC number: N0080N06; chr: X[16523858..16690871] |
| 13 |
RO69L12 |
19 |
21670484 |
N0078O05 |
|
21820923 |
FPC number: N0078O05; chr: 19[21670484..21820923] |
| 14 |
RO69H24 |
8 |
141817958 |
N0074F07 |
|
141984866 |
FPC number: N0074F07; chr: 8[141817958..141984866] |
| 15 |
RO69H12 |
3 |
120890112 |
N0073F12 |
AC078856 |
121003636 |
FPC number: N0073F12; chr: 3[120890112..121003636] |
| 16 |
RO69D24 |
16 |
79310529 |
N0070D24 |
AC009159 |
79472208 |
FPC number: N0070D24; chr: 16[79310529..79472208] |
| 17 |
RO69D12 |
2 |
237533259 |
N0067N02 |
|
237706235 |
FPC number: N0067N02; chr: 2[237533259..237706235] |
| 18 |
|
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|
Empty |
| 19 |
RO68P12 |
4 |
33938955 |
N0548L20 |
AC110790 |
34060150 |
FPC number: N0548L20; chr: 4[33938955..34060150] |
| 20 |
RO68L24 |
1 |
144235016 |
N0525D19 |
|
144427925 |
FPC number: N0525D19; chr: 1[144235016..144427925] |
Total number of rows: 53856
Table truncated, full table size 5000 Kbytes.
| Supplementary data files not provided |
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