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Platform GPL23596 Query DataSets for GPL23596
Status Public on Mar 10, 2020
Title 081229_Dm_JM_ChIP_2_HX1 Drosophila melanogaster tiling array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer NimbleGen
Manufacture protocol High-density DNA array made with with Maskless Array Synthesizer (MAS). See manufacturer's website at http://www.roche.com/.
 
Description Roche NimbleGen and J.R. Manak designed this array set constituted of two 2.1 million feature microarrays using Genome Release 5. It contains 50-mer oligonucleotide probes with a median probe spacing of 33 bp. Repeat rich sequences such as heterochromatin and transposons were included in the design. For this reason, up to close 100 matches per sequence were tolerated.
 
Submission date Jun 16, 2017
Last update date Mar 12, 2020
Contact name David H Price
E-mail(s) david-price@uiowa.edu
Organization name University of Iowa
Department Biochemistry and Molecular Biology
Lab 260 EMRB
Street address 500 Newton Road
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Samples (4) GSM2671884, GSM2671886, GSM2671888, GSM2671890
Series (2)
GSE100141 Gene expression profiling of Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae. [NimbleGen tiling array]
GSE100143 Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae.

Data table header descriptions
ID
SEQ_ID
CHROMOSOME
RANGE_START
COUNT_
LENGTH
GC

Data table
ID SEQ_ID CHROMOSOME RANGE_START COUNT_ LENGTH GC
CHR03LHETFS001366825 chr3LHET:1-2555491 chr3LHET 1366825 1 50 0.28
CHR03LHETFS001366865 chr3LHET:1-2555491 chr3LHET 1366865 1 50 0.34
CHR03LHETFS001366891 chr3LHET:1-2555491 chr3LHET 1366891 1 50 0.36
CHR03LHETFS001366923 chr3LHET:1-2555491 chr3LHET 1366923 1 50 0.32
CHR03LHETFS001366955 chr3LHET:1-2555491 chr3LHET 1366955 1 50 0.28
CHR03LHETFS001366995 chr3LHET:1-2555491 chr3LHET 1366995 1 50 0.26
CHR03LHETFS001367021 chr3LHET:1-2555491 chr3LHET 1367021 1 50 0.22
CHR03LHETFS001367064 chr3LHET:1-2555491 chr3LHET 1367064 3 50 0.36
CHR03LHETFS001367096 chr3LHET:1-2555491 chr3LHET 1367096 2 50 0.36
CHR03LHETFS001367130 chr3LHET:1-2555491 chr3LHET 1367130 1 50 0.42
CHR03LHETFS001367158 chr3LHET:1-2555491 chr3LHET 1367158 1 50 0.36
CHR03LHETFS001367186 chr3LHET:1-2555491 chr3LHET 1367186 1 50 0.24
CHR03LHETFS001367222 chr3LHET:1-2555491 chr3LHET 1367222 1 50 0.26
CHR03LHETFS001367256 chr3LHET:1-2555491 chr3LHET 1367256 1 50 0.26
CHR03LHETFS001367290 chr3LHET:1-2555491 chr3LHET 1367290 1 50 0.40
CHR03LHETFS001367318 chr3LHET:1-2555491 chr3LHET 1367318 3 50 0.44
CHR03LHETFS001367360 chr3LHET:1-2555491 chr3LHET 1367360 3 50 0.32
CHR03LHETFS001367394 chr3LHET:1-2555491 chr3LHET 1367394 1 50 0.46
CHR03LHETFS001367424 chr3LHET:1-2555491 chr3LHET 1367424 1 50 0.38
CHR03LHETFS001367452 chr3LHET:1-2555491 chr3LHET 1367452 1 50 0.30

Total number of rows: 2145021

Table truncated, full table size 125805 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL23596_081229_Dm_JM_ChIP_2_HX1.gff.gz 6.4 Mb (ftp)(http) GFF
GPL23596_081229_Dm_JM_ChIP_2_HX1.ncd.gz 257 b (ftp)(http) NCD
GPL23596_081229_Dm_JM_ChIP_2_HX1.ndf.gz 112.8 Mb (ftp)(http) NDF
GPL23596_081229_Dm_JM_ChIP_2_HX1.pos.gz 14.9 Mb (ftp)(http) POS

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