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Platform GPL23200 Query DataSets for GPL23200
Status Public on Mar 22, 2017
Title IlluminaHumanOmni2.5Exome-8 v1.0 B
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina Inc.
Manufacture protocol see manufacturer's website
 
 
Submission date Mar 21, 2017
Last update date Mar 22, 2017
Contact name Rajini Haraksingh
E-mail(s) rharaksingh@gmail.com
Phone 2035358367
Organization name The University of the West Indies
Department Life Sciences
Street address The University of the West Indies
City St. Augustine
ZIP/Postal code -
Country Trinidad and Tobago
 
Samples (2) GSM2544975, GSM2544976
Series (2)
GSE96846 Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans [IlluminaHumanOmni2.5Exome]
GSE96909 Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans

Data table header descriptions
ID Name
IlmnID
IlmnStrand
SNP
AddressA_ID
SEQUENCE AlleleA_ProbeSeq
AddressB_ID
SEQUENCE AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
BeadSetID
RefStrand
Exp_Clusters

Data table
ID IlmnID IlmnStrand SNP AddressA_ID SEQUENCE AddressB_ID SEQUENCE GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID RefStrand Exp_Clusters
rs2661837 rs2661837-131_B_R_1865214623 BOT [G/C] 0059608986 GATGGAGCATTACTGAAAAAATAAAGAACAATGGCAAAATGCAATCATTG 0001609420 GATGGAGCATTACTGAAAAAATAAAGAACAATGGCAAAATGCAATCATTC 37 6 160790174 diploid Homo sapiens dbSNP 131 TOP CAATGCCATAATTTCCAAGTGCCTACTTGAACAGTAGATACTTTCAGGGGATTTTCATAT[C/G]AATGATTGCATTTTGCCATTGTTCTTTATTTTTTCAGTAATGCTCCATCTGTAAACAACC CAATGCCATAATTTCCAAGTGCCTACTTGAACAGTAGATACTTTCAGGGGATTTTCATAT[C/G]AATGATTGCATTTTGCCATTGTTCTTTATTTTTTCAGTAATGCTCCATCTGTAAACAACC 420 - 3
rs17599091 rs17599091-131_B_F_1865498254 BOT [G/C] 0022723170 TATAGCTGTGCTTGCTGAAGAAACACACAATTTTGGACTGAATTTCCTAG 0001640100 TATAGCTGTGCTTGCTGAAGAAACACACAATTTTGGACTGAATTTCCTAC 37 4 100512919 diploid Homo sapiens dbSNP 131 BOT GACAGCTTTGTTATAGCTGTGCTTGCTGAAGAAACACACAATTTTGGACTGAATTTCCTA[C/G]AAACCATTAAGGGGAAAATAGTATCGAAGTAAGATAATGCTAAAATTTTTATTTTCTTTG CAAAGAAAATAAAAATTTTAGCATTATCTTACTTCGATACTATTTTCCCCTTAATGGTTT[C/G]TAGGAAATTCAGTCCAAAATTGTGTGTTTCTTCAGCAAGCACAGCTATAACAAAGCTGTC 420 + 3
rs1492138 rs1492138-131_B_F_1857603819 BOT [T/A] 0099703272 AATGATTTTCTTTATGAGCTGCTGTTGTACTTAGTGTCTGTGTGTCCCCT 0001682172 AATGATTTTCTTTATGAGCTGCTGTTGTACTTAGTGTCTGTGTGTCCCCA 37 12 22030178 diploid Homo sapiens dbSNP 131 BOT TCCCAGATGTAAATGATTTTCTTTATGAGCTGCTGTTGTACTTAGTGTCTGTGTGTCCCC[A/T]CTCTTTGGTACTTAGCCCATAATGTCGTGTCTTGTACTCACTTCTTTCCATGGTTTACTT AAGTAAACCATGGAAAGAAGTGAGTACAAGACACGACATTATGGGCTAAGTACCAAAGAG[A/T]GGGGACACACAGACACTAAGTACAACAGCAGCTCATAAAGAAAATCATTTACATCTGGGA 420 - 3
rs7774255 rs7774255-131_T_R_1865215201 TOP [A/T] 0088748467 TGCATGACATCTAATATATTTGTGTGTCAAGTAACTCAATTCCTCAGCAA 0001686872 TGCATGACATCTAATATATTTGTGTGTCAAGTAACTCAATTCCTCAGCAT 37 6 29274356 diploid Homo sapiens dbSNP 131 BOT TTTTGAATTGAATATTAACTAATCGCAATGAAAATAAATTCATCTCATTTCAGTACCTCC[A/T]TGCTGAGGAATTGAGTTACTTGACACACAAATATATTAGATGTCATGCATTTTCTTCCTA TAGGAAGAAAATGCATGACATCTAATATATTTGTGTGTCAAGTAACTCAATTCCTCAGCA[A/T]GGAGGTACTGAAATGAGATGAATTTATTTTCATTGCGATTAGTTAATATTCAATTCAAAA 420 - 3
rs206018 rs206018-131_T_R_1865723043 TOP [C/G] 0057783865 GGTGTTCAGGAGGCATCTTCTTCAGGAAGATGTCCCTAACTTCTCCCCAC 0001691536 GGTGTTCAGGAGGCATCTTCTTCAGGAAGATGTCCCTAACTTCTCCCCAG 37 6 32177880 diploid Homo sapiens dbSNP 131 BOT GCCAGCTTTGCCTCTCCTGGCTTAGTGACCTGGACCACAAAGAAGAGGCCCTAATCCAGC[C/G]TGGGGAGAAGTTAGGGACATCTTCCTGAAGAAGATGCCTCCTGAACACCAGCCTGTGGAA TTCCACAGGCTGGTGTTCAGGAGGCATCTTCTTCAGGAAGATGTCCCTAACTTCTCCCCA[C/G]GCTGGATTAGGGCCTCTTCTTTGTGGTCCAGGTCACTAAGCCAGGAGAGGCAAAGCTGGC 420 - 3
rs11929668 rs11929668-131_B_F_1865537784 BOT [G/C] 0043745945 GCCTTTCTCATCTACAGGGTAAAAGAGAAGCTTACGGAATTCAGCCAAGG 0001703267 GCCTTTCTCATCTACAGGGTAAAAGAGAAGCTTACGGAATTCAGCCAAGC 37 3 119535795 diploid Homo sapiens dbSNP 131 BOT CAGGCTGTTCTGCCTTTCTCATCTACAGGGTAAAAGAGAAGCTTACGGAATTCAGCCAAG[C/G]CTTGTCTCTTGGCTGACCTGAAATGTCCAGAGATTATGCTTGTGCAGCCTCAGAGCAGCC GGCTGCTCTGAGGCTGCACAAGCATAATCTCTGGACATTTCAGGTCAGCCAAGAGACAAG[C/G]CTTGGCTGAATTCCGTAAGCTTCTCTTTTACCCTGTAGATGAGAAAGGCAGAACAGCCTG 420 + 3
rs4252072 rs4252072-131_T_F_1865740918 TOP [A/T] 0093650357 TAAAGCAGAGACTTTGTGTAGGTGACGGGCTTGGGAAGGTAGCTATGGAA 0001706873 TAAAGCAGAGACTTTGTGTAGGTGACGGGCTTGGGAAGGTAGCTATGGAT 37 6 161128264 diploid Homo sapiens dbSNP 131 TOP ATGAAGTTGACTAAAGCAGAGACTTTGTGTAGGTGACGGGCTTGGGAAGGTAGCTATGGA[A/T]TCCAGACTGAGCACCCATAGCAGGACCACGGGATGGAGATGGGAGGGGTCAGGGGCCAGG ATGAAGTTGACTAAAGCAGAGACTTTGTGTAGGTGACGGGCTTGGGAAGGTAGCTATGGA[A/T]TCCAGACTGAGCACCCATAGCAGGACCACGGGATGGAGATGGGAGGGGTCAGGGGCCAGG 420 + 3
rs6455 rs6455-131_T_R_1856964249 TOP [C/G] 0092764150 GCTTCTTGTGGGCTTTCCAGAGCAGGGAGTAGTCTCCCAAGGACAGGTCC 0001707121 GCTTCTTGTGGGCTTTCCAGAGCAGGGAGTAGTCTCCCAAGGACAGGTCG 37 6 32006896 diploid Homo sapiens dbSNP 131 BOT AGTTCCCACCCTCCAGCCCCCACCTCCTCCTGCAGACAAGCTGGTGTCTAGGAACTACCC[C/G]GACCTGTCCTTGGGAGACTACTCCCTGCTCTGGAAAGCCCACAAGAAGCTCACCCGCTCA TGAGCGGGTGAGCTTCTTGTGGGCTTTCCAGAGCAGGGAGTAGTCTCCCAAGGACAGGTC[C/G]GGGTAGTTCCTAGACACCAGCTTGTCTGCAGGAGGAGGTGGGGGCTGGAGGGTGGGAACT 420 - 3
rs12340619 rs12340619-131_T_R_1865487183 TOP [C/G] 0013775905 TCACATTGCTCTCAGAACAGCTTCTCTGTGAGTGACTTTAGACTTCTCTC 0001777507 TCACATTGCTCTCAGAACAGCTTCTCTGTGAGTGACTTTAGACTTCTCTG 37 9 86934696 diploid Homo sapiens dbSNP 131 BOT ATTTGTTTGAGTAGAGAAAGACACTGCCATAAGAACTTCCTATGCATTTGGGAAGGAGAC[C/G]AGAGAAGTCTAAAGTCACTCACAGAGAAGCTGTTCTGAGAGCAATGTGACCACGCCTTCA TGAAGGCGTGGTCACATTGCTCTCAGAACAGCTTCTCTGTGAGTGACTTTAGACTTCTCT[C/G]GTCTCCTTCCCAAATGCATAGGAAGTTCTTATGGCAGTGTCTTTCTCTACTCAAACAAAT 420 - 3
rs10786068 rs10786068-131_B_R_1865160253 BOT [G/C] 0044707543 AATGAACTTTCAATTTTGGAATACTGAATGCCCCCATCTATCATTAAGTG 0001785941 AATGAACTTTCAATTTTGGAATACTGAATGCCCCCATCTATCATTAAGTC 37 10 94842477 diploid Homo sapiens dbSNP 131 TOP CAGCCAAATCAATTCATTGACTGGTTCGTTAAGTACAGCCATATTGTCCAACACAACAAT[C/G]ACTTAATGATAGATGGGGGCATTCAGTATTCCAAAATTGAAAGTTCATTTAATGTCAGGT CAGCCAAATCAATTCATTGACTGGTTCGTTAAGTACAGCCATATTGTCCAACACAACAAT[C/G]ACTTAATGATAGATGGGGGCATTCAGTATTCCAAAATTGAAAGTTCATTTAATGTCAGGT 420 - 3
rs1043731 rs1043731-131_T_R_1865191587 TOP [A/T] 0073787560 CCAGCATCGTGTTTTTGCTAAAATACATGTTGTAGAAGTCATAATTCATA 0001796426 CCAGCATCGTGTTTTTGCTAAAATACATGTTGTAGAAGTCATAATTCATT 37 22 45588377 diploid Homo sapiens dbSNP 131 TOP TCCAGTGGAGGCCAGCATCGTGTTTTTGCTAAAATACATGTTGTAGAAGTCATAATTCAT[A/T]GTGAAGAATCTCAACAGGTTTTCTTACAGATTTAATTACTCTCACACAAATAATTCATTT TCCAGTGGAGGCCAGCATCGTGTTTTTGCTAAAATACATGTTGTAGAAGTCATAATTCAT[A/T]GTGAAGAATCTCAACAGGTTTTCTTACAGATTTAATTACTCTCACACAAATAATTCATTT 420 + 3
rs2022109 rs2022109-131_T_R_1865402485 TOP [C/G] 0054749278 AAATGTCAAGATAGAGGCAAGCAAGAGGATCACCTAGGAGAGTAAATTAC 0002631896 AAATGTCAAGATAGAGGCAAGCAAGAGGATCACCTAGGAGAGTAAATTAG 37 6 32905773 diploid Homo sapiens dbSNP 131 BOT CTCTTAAATTTGGAATGAATGTAGTCAAACTAATGAGATTGCTAATACTGCCATCTTTTA[C/G]TAATTTACTCTCCTAGGTGATCCTCTTGCTTGCCTCTATCTTGACATTTTTCAAACACAA TTGTGTTTGAAAAATGTCAAGATAGAGGCAAGCAAGAGGATCACCTAGGAGAGTAAATTA[C/G]TAAAAGATGGCAGTATTAGCAATCTCATTAGTTTGACTACATTCATTCCAAATTTAAGAG 420 - 3
rs4433435 rs4433435-131_T_R_1863460488 TOP [C/G] 0046697951 AGAAAGAGGTGCCAATTCTGACAATGGGTTGGTAGGAAAACAACACAGAC 0002642205 AGAAAGAGGTGCCAATTCTGACAATGGGTTGGTAGGAAAACAACACAGAG 37 1 171223951 diploid Homo sapiens dbSNP 131 BOT CTTCCCTTCTCTGCCCACTGAAGTCTATTCATCCTTCAAAATCTGGAGCAAATAGTAATC[C/G]TCTGTGTTGTTTTCCTACCAACCCATTGTCAGAATTGGCACCTCTTTCTTTGTGCTCTTA TAAGAGCACAAAGAAAGAGGTGCCAATTCTGACAATGGGTTGGTAGGAAAACAACACAGA[C/G]GATTACTATTTGCTCCAGATTTTGAAGGATGAATAGACTTCAGTGGGCAGAGAAGGGAAG 420 - 3
rs12456529 rs12456529-131_B_R_1865520589 BOT [G/C] 0088710557 ATCACAGAAAAAAGGTGACTATCAGCCCAGAAGTCCAGATACTTGACAGG 0002642265 ATCACAGAAAAAAGGTGACTATCAGCCCAGAAGTCCAGATACTTGACAGC 37 18 48691665 diploid Homo sapiens dbSNP 131 TOP CAGCACTCCATCCTTGGCTATAAGTCTTATCTGGTCAAGCTGCTCTCTGTATTGGACCCT[C/G]CTGTCAAGTATCTGGACTTCTGGGCTGATAGTCACCTTTTTTCTGTGATGTTTCTCCCTG CAGCACTCCATCCTTGGCTATAAGTCTTATCTGGTCAAGCTGCTCTCTGTATTGGACCCT[C/G]CTGTCAAGTATCTGGACTTCTGGGCTGATAGTCACCTTTTTTCTGTGATGTTTCTCCCTG 420 - 3
rs4618082 rs4618082-131_T_F_1865705334 TOP [A/T] 0034798925 CATCGAAGGTGACTAACAATGACAAAGGCCTTATGAACTGTACAGACAAA 0002643993 CATCGAAGGTGACTAACAATGACAAAGGCCTTATGAACTGTACAGACAAT 37 2 70106298 diploid Homo sapiens dbSNP 131 TOP ACTGATATTCACATCGAAGGTGACTAACAATGACAAAGGCCTTATGAACTGTACAGACAA[A/T]ACAGAAGATTATTCTTATCCTCATTGCATTTCTATGCATATGCGTAAGAACATTTTAAAG ACTGATATTCACATCGAAGGTGACTAACAATGACAAAGGCCTTATGAACTGTACAGACAA[A/T]ACAGAAGATTATTCTTATCCTCATTGCATTTCTATGCATATGCGTAAGAACATTTTAAAG 420 + 3
rs17448457 rs17448457-131_T_F_1865481836 TOP [A/T] 0067655564 GTGATAAGGGGTTCTCAGATTTCAGGGTACTTAGGTCATACATGGGAATA 0002644436 GTGATAAGGGGTTCTCAGATTTCAGGGTACTTAGGTCATACATGGGAATT 37 2 201465557 diploid Homo sapiens dbSNP 131 TOP GATGTAAACAAGTGATAAGGGGTTCTCAGATTTCAGGGTACTTAGGTCATACATGGGAAT[A/T]TGTGGGTAATGAAGATTCCTGGGACCCACCCCTAGAGAGTTTGACTCAGTAATATTGTTT GATGTAAACAAGTGATAAGGGGTTCTCAGATTTCAGGGTACTTAGGTCATACATGGGAAT[A/T]TGTGGGTAATGAAGATTCCTGGGACCCACCCCTAGAGAGTTTGACTCAGTAATATTGTTT 420 + 3
rs2657167 rs2657167-131_B_R_1857284001 BOT [G/C] 0052642571 TCCTCAATCCCATTGTCTATGCTGTTCGCACCAAGCAGATCCGAGAGAGG 0002654344 TCCTCAATCCCATTGTCTATGCTGTTCGCACCAAGCAGATCCGAGAGAGC 37 11 4567335 diploid Homo sapiens dbSNP 131 BOT CATTCCTCCAATCCTCAATCCCATTGTCTATGCTGTTCGCACCAAGCAGATCCGAGAGAG[C/G]CTTCTCCAAATACCAAGGATAGAAATGAAGATTAGATGATTACTATTTTCTTCTCTCTCA TGAGAGAGAAGAAAATAGTAATCATCTAATCTTCATTTCTATCCTTGGTATTTGGAGAAG[C/G]CTCTCTCGGATCTGCTTGGTGCGAACAGCATAGACAATGGGATTGAGGATTGGAGGAATG 420 + 3
rs1264352 rs1264352-131_T_R_1866533721 TOP [C/G] 0054609148 TTGCTCTTTCTTCTGGAAACATTATTCTGTTCCTTTGGACATGGGCAAGC 0002696925 TTGCTCTTTCTTCTGGAAACATTATTCTGTTCCTTTGGACATGGGCAAGG 37 6 30789647 diploid Homo sapiens dbSNP 131 TOP GGCTTCTGCTCTTGCTCTTTCTTCTGGAAACATTATTCTGTTCCTTTGGACATGGGCAAG[C/G]GTCCTGTCCCTAACTTGTCCTTCTTTTTCTTTTGATCTTAACCAGTTTCACTTGTACCAA GGCTTCTGCTCTTGCTCTTTCTTCTGGAAACATTATTCTGTTCCTTTGGACATGGGCAAG[C/G]GTCCTGTCCCTAACTTGTCCTTCTTTTTCTTTTGATCTTAACCAGTTTCACTTGTACCAA 420 + 3
rs2233967 rs2233967-131_T_F_1866542180 TOP [C/G] 0023681590 ATAAGGATGGCATCCAGGTCCATTTCCCTAGCTAGATCCAGGGTCTCATC 0002699151 ATAAGGATGGCATCCAGGTCCATTTCCCTAGCTAGATCCAGGGTCTCATG 37 6 31080828 diploid Homo sapiens dbSNP 131 BOT GCCCCAACCTGCAGGAGGTTCTGGGGTGCAGAAGTGGCCCCATCTGAGGAGCTGCTCCTA[C/G]ATGAGACCCTGGATCTAGCTAGGGAAATGGACCTGGATGCCATCCTTATGAGATACTGAC GTCAGTATCTCATAAGGATGGCATCCAGGTCCATTTCCCTAGCTAGATCCAGGGTCTCAT[C/G]TAGGAGCAGCTCCTCAGATGGGGCCACTTCTGCACCCCAGAACCTCCTGCAGGTTGGGGC 420 - 3
rs12119601 rs12119601-131_T_F_1865547305 TOP [C/G] 0008768542 GTCCCAACGAATATCTTCTCTCAGTGTTCTATCCTAATAGTACCACTATC 0002714148 GTCCCAACGAATATCTTCTCTCAGTGTTCTATCCTAATAGTACCACTATG 37 1 149820656 diploid Homo sapiens dbSNP 131 TOP CTCCCTTCAGTGTCCCAACGAATATCTTCTCTCAGTGTTCTATCCTAATAGTACCACTAT[C/G]TACACAGTTGCTCAAGCCAAAAATCTAGGGGTTTCACTGTTAGCTAAATCCTGTTCCTCA CTCCCTTCAGTGTCCCAACGAATATCTTCTCTCAGTGTTCTATCCTAATAGTACCACTAT[C/G]TACACAGTTGCTCAAGCCAAAAATCTAGGGGTTTCACTGTTAGCTAAATCCTGTTCCTCA 420 + 3

Total number of rows: 2567845

Table truncated, full table size 1075922 Kbytes.




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GPL23200_HumanOmni2-5Exome-8-v1-0-B.csv.gz 262.2 Mb (ftp)(http) CSV

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