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Platform GPL22144 Query DataSets for GPL22144
Status Public on Jul 12, 2016
Title NimbleGen Human ChIP-chip 2.1M Deluxe Promoter Array [100718_HG19_Deluxe_Prom_ChIP_HX1]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol See manufacturer's website (www.nimblegen.com).
 
Description Design ID: 537713
Design name: 100718_HG19_Deluxe_Prom_ChIP_HX1
Genome build: HG19
 
Submission date Jul 12, 2016
Last update date Jul 12, 2016
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (1) GSM2231185
Series (1)
GSE84295 ChIP-chip assay on circular chromosome conformation capture (4C) genomic DNA sample from human telomerase-immortalized corneal epithelial (HTCE) cells with the specification of CTCF binding

Data table header descriptions
ID PROBE_ID from .pos file
SEQ_ID
CHROMOSOME Chromosome
RANGE_GB RefSeq accession.version of CHROMOSOME (hg19)
SPOT_ID
RANGE_START Start coordinate relative to RANGE_GB; POSITION
LENGTH Probe length
RANGE_END End coordinate relative to RANGE_GB
SEQUENCE Probe sequence

Data table
ID SEQ_ID CHROMOSOME RANGE_GB SPOT_ID RANGE_START LENGTH RANGE_END SEQUENCE
CHR01FS000015738 chr1:15366-44081 chr1 NC_000001.10 15738 50 15787 AGGGGAGGAGGCGATCTTGCCCAAGGCCCTCCGACTGCAAGCTCCAGGGC
CHR01FS000016058 chr1:15366-44081 chr1 NC_000001.10 16058 50 16107 CGAGGAGCCCTGCGCTGGGGAGGCCGGACCTTTGGAGACTGTGTGTGGGG
CHR01FS000016770 chr1:15366-44081 chr1 NC_000001.10 16770 50 16819 AACACAAAGTGTGGGGTGTCTAGGGAAGAAGGTGTGTGACCAGGGAGGTC
CHR01FS000017334 chr1:15366-44081 chr1 NC_000001.10 17334 50 17383 CAGCCAGGGGGTCCAGGAAGACATACTTCTTCTACCTACAGAGGCGACAT
CHR01FS000017588 chr1:15366-44081 chr1 NC_000001.10 17588 50 17637 CCTGCCCTCTGGCCATACAGGTTCTCGGTGGTGTTGAAGAGCAGCAAGGA
CHR01FS000017864 chr1:15366-44081 chr1 NC_000001.10 17864 50 17913 CAGTATCCAGTCCTCCTGGTGTGTGACAGGCTATATGCGCGGCCAGCAGA
CHR01FS000018156 chr1:15366-44081 chr1 NC_000001.10 18156 50 18205 AAGAAAGCTCAAGGTACAGGTGGGCAGCAGGGCAGAGACTGGGCAGCCTC
CHR01FS000018710 chr1:15366-44081 chr1 NC_000001.10 18710 50 18759 ACTTCACAACCCCTCATGATCACGTGCAGCAGACAATGTGGCCTCTGCAG
CHR01FS000018838 chr1:15366-44081 chr1 NC_000001.10 18838 50 18887 CCCTGCACATACTGAACGGCTCACTGAGCAAACCCCGAGTCCCGACCACC
CHR01FS000019822 chr1:15366-44081 chr1 NC_000001.10 19822 50 19871 TTCATCTGCTGTAAAGGGTCCTCCAGCACAAGCTGTCTTAATTGACCCTA
CHR01FS000020184 chr1:15366-44081 chr1 NC_000001.10 20184 50 20233 AGGATTATTAGCCTGCTGTGCCCGGGGAAAACATGCAGCACAGTGCATCT
CHR01FS000020366 chr1:15366-44081 chr1 NC_000001.10 20366 50 20415 TGGACTGATTCCAGCCTTGCACGGAGGGATCTGGCAGAGTCCATCCAGTT
CHR01FS000020764 chr1:15366-44081 chr1 NC_000001.10 20764 50 20813 TTCTTTCAATCAGCAGGGACCGTGCACTCTCTTGGAGCCACCACAGAAAA
CHR01FS000020848 chr1:15366-44081 chr1 NC_000001.10 20848 50 20897 ACCACAGAAAACAGAGGGTGACTGTCATCCCCTCCAGTCTCTGCACACTC
CHR01FS000020986 chr1:15366-44081 chr1 NC_000001.10 20986 50 21035 CAGTGAGGCCAGAGGCCGGGCTGTGCTGGGGCCTGAGCCGGGTGGTGGGG
CHR01FS000021090 chr1:15366-44081 chr1 NC_000001.10 21090 50 21139 GGACGGGTTCAAAGCTGGTCACATCCCCACCGAAAAAGCCCATGGACAAC
CHR01FS000021314 chr1:15366-44081 chr1 NC_000001.10 21314 50 21363 TGCTTGCAAGTCCCCTGTCTGTAGCCTCACCCCTGTCGTATCCTGACTAC
CHR01FS000021466 chr1:15366-44081 chr1 NC_000001.10 21466 50 21515 CTGCCCTGCTCAAAATCCAATCACAGCTCCCTAACACGCCTGAATCAACT
CHR01FS000021836 chr1:15366-44081 chr1 NC_000001.10 21836 50 21885 GCCTCCCTCCAAGCCTGCAGCCCCCATTTCCAGACCCTGCCAGGGCAACC
CHR01FS000021924 chr1:15366-44081 chr1 NC_000001.10 21924 50 21973 AGTCTGCCCTATGTGGAGTAAGCACGTGGTTTTCCTCTTCAGCAACTATT

Total number of rows: 2077859

Table truncated, full table size 275534 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL22144_100718_HG19_Deluxe_Prom_ChIP_HX1.gff.gz 5.3 Mb (ftp)(http) GFF
GPL22144_100718_HG19_Deluxe_Prom_ChIP_HX1.ncd.gz 279 b (ftp)(http) NCD
GPL22144_100718_HG19_Deluxe_Prom_ChIP_HX1.ndf.gz 143.1 Mb (ftp)(http) NDF
GPL22144_100718_HG19_Deluxe_Prom_ChIP_HX1.pos.gz 17.8 Mb (ftp)(http) POS

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