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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 08, 2015 |
| Title |
Illumina NextSeq 500 (Escherichia coli) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Escherichia coli |
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| Submission date |
Dec 08, 2015 |
| Last update date |
Dec 08, 2015 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (2132)
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GSM1968354, GSM1968355, GSM1968356, GSM1968357, GSM1968358, GSM1968359
GSM1968360, GSM1968361, GSM1968362, GSM1968363, GSM1968364, GSM1968365, GSM1968366, GSM1968367, GSM1968368, GSM1968369, GSM1968370, GSM1968371, GSM1968372, GSM1968373, GSM1968374, GSM1968375, GSM1968376, GSM1968377, GSM1968378, GSM1968379, GSM1968380, GSM1968381, GSM1968382, GSM1968383, GSM1968384, GSM1968385, GSM1968386, GSM1968387, GSM1968388, GSM1968389, GSM1968390, GSM1968391, GSM1968392, GSM1968393, GSM1968394, GSM1968395, GSM1968396, GSM1968397, GSM1968398, GSM1968399, GSM1968400, GSM1968401, GSM1968402, GSM1968403, GSM1968404, GSM1968405, GSM1968406, GSM1968407, GSM1968408, GSM1968409, GSM1968410, GSM1968411, GSM1968412, GSM1968413, GSM1968414, GSM1968415, GSM1968416, GSM1968417, GSM1968418, GSM1968419, GSM1968420, GSM1968421, GSM1968422, GSM1968423, GSM1968424, GSM1968425, GSM1968426, GSM1968427, GSM1968428, GSM1968429, GSM1968430, GSM1968431, GSM1968432, GSM1968433, GSM2402735, GSM2402736, GSM2402737, GSM2402738, GSM2402739, GSM2516397, GSM2516400, GSM2516401, GSM2516402, GSM2516403, GSM2516404, GSM2516405, GSM2516406, GSM2516407, GSM2536125, GSM2536126, GSM2536127, GSM2536128, GSM2536129, GSM2536130, GSM2536131, GSM2536132, GSM2536133, GSM2536134, GSM2536135, GSM2536136, GSM2536137, GSM2536138, GSM2536139, GSM2536140, GSM2536141, GSM2536142, GSM2536143, GSM2536144, GSM2536145, GSM2536146, GSM2536147, GSM2536148, GSM2536149, GSM2536150, GSM2536151, GSM2802548, GSM2802549, GSM2802552, GSM2802553, GSM2802554, GSM2802555, GSM2802556, GSM2802557, GSM2802558, GSM2802559, GSM2802562, GSM2802563, GSM2802564, GSM2802565, GSM2802566, GSM2802567, GSM2864853, GSM2864854, GSM2864855, GSM2864856, GSM2864857, GSM2864858, GSM2864859, GSM2864860, GSM2864861, GSM2864862, GSM2864863, GSM2864864, GSM2864865, GSM2864866, GSM2864867, GSM2864868, GSM2864869, GSM2912620, GSM2966927, GSM2966928, GSM2966929, GSM3043051, GSM3043052, GSM3043053, GSM3043054, GSM3043055, GSM3043056, GSM3043057, GSM3043058, GSM3043059, GSM3043060, GSM3043061, GSM3043062, GSM3043063, GSM3043064, GSM3043065, GSM3043066, GSM3043067, GSM3043068, GSM3043069, GSM3043070, GSM3043071, GSM3043072, GSM3043073, GSM3043074, GSM3043075, GSM3043076, GSM3043077, GSM3043078, GSM3043079, GSM3043080, GSM3043081, GSM3043082, GSM3043083, GSM3043084, GSM3043085, GSM3043086, GSM3043087, GSM3043088, GSM3043089, GSM3043090, GSM3043091, GSM3043092, GSM3043093, GSM3043094, GSM3043095, GSM3043096, GSM3043097, GSM3043098, GSM3043099, GSM3043100, GSM3043101, GSM3043102, GSM3043103, GSM3043104, GSM3043105, GSM3043106, GSM3043107, GSM3043108, GSM3043109, GSM3043110, GSM3043111, GSM3043112, GSM3043113, GSM3043114, GSM3043115, GSM3043116, GSM3043117, GSM3043118, GSM3043119, GSM3043120, GSM3043121, GSM3043122, GSM3043123, GSM3043124, GSM3043125, GSM3043126, GSM3043127, GSM3043128, GSM3043129, GSM3043130, GSM3043131, GSM3043132, GSM3043133, GSM3043134, GSM3043135, GSM3043136, GSM3043137, GSM3043138, GSM3043139, GSM3043140, GSM3043141, GSM3043142, GSM3043143, GSM3043144, GSM3043145, GSM3043146, GSM3043147, GSM3043148, GSM3043149, GSM3043150, GSM3043151, GSM3043152, GSM3043153, GSM3043154, GSM3043155, GSM3043156, GSM3043157, GSM3043158, GSM3045709, GSM3045710, GSM3273132, GSM3273133, GSM3273134, GSM3273135, GSM3273136, GSM3273137, GSM3273138, GSM3273139, GSM3273140, GSM3273141, GSM3273142, GSM3273143, GSM3273144, GSM3273145, GSM3273146, GSM3273147, GSM3273148, GSM3273149, GSM3273150, GSM3273151, GSM3273152, GSM3273153, GSM3273154, GSM3273155, GSM3273156, GSM3273157, GSM3273158, GSM3273159, GSM3273160, GSM3273161, GSM3273162, GSM3307943, GSM3307944, GSM3307945, GSM3307946, GSM3307947, GSM3307948, GSM3307949, GSM3307950, GSM3307951, GSM3307952, GSM3307953, GSM3307954, GSM3307955, GSM3307956, GSM3307957, GSM3307958, GSM3307959, GSM3307960, GSM3307961, GSM3307962, GSM3307963, GSM3307964, GSM3315591, GSM3315592, GSM3315593, GSM3315594, GSM3315595, GSM3315596, GSM3315597, GSM3315598, GSM3315599, GSM3315600, GSM3315601, GSM3315602, GSM3396579, GSM3396583, GSM3450047, GSM3450048, GSM3450049, GSM3450050, GSM3450051, GSM3450052, GSM3450053, GSM3450054, GSM3450055, GSM3450056, GSM3463226, GSM3463227, GSM3463228, GSM3463229, GSM3463230, GSM3553909, GSM3553910, GSM3553911, GSM3553912, GSM3553913, GSM3553914, GSM3553915, GSM3553916, GSM3563595, GSM3563596, GSM3563597, GSM3563598, GSM3563599, GSM3563600, GSM3566374, GSM3566375, GSM3566376, GSM3566377, GSM3566378, GSM3566379, GSM3566380, GSM3566381, GSM3566382, GSM3566383, GSM3566384, GSM3566385, GSM3566386, GSM3566387, GSM3566388, GSM3591130, GSM3591131, GSM3591132, GSM3591133, GSM3591134, GSM3591135, GSM3591136, GSM3591137, GSM3591138, GSM3591139, GSM3591140, GSM3591141, GSM3591142, GSM3591143, GSM3591144, GSM3591145, GSM3591146, GSM3591147, GSM3591148, GSM3591149, GSM3591150, GSM3591151, GSM3591152, GSM3591153, GSM3591154, GSM3591155, GSM3591156, GSM3591157, GSM3591158, GSM3591159, GSM3591160, GSM3591161, GSM3591162, GSM3591163, GSM3591164, GSM3591165, GSM3591166, GSM3591167, GSM3591168, GSM3591169, GSM3591170, GSM3591171, GSM3591172, GSM3591173, GSM3591174, GSM3591175, GSM3591176, GSM3591177, GSM3591178, GSM3591179, GSM3591180, GSM3591181, GSM3591182, GSM3591183, GSM3591184, GSM3591185, GSM3591186, GSM3591187, GSM3591188, GSM3591189, GSM3591190, GSM3591191, GSM3591192, GSM3591193, GSM3591194, GSM3591195, GSM3591196, GSM3591197, GSM3591198, GSM3591199, GSM3591200, GSM3591201, GSM3591202, GSM3591203, GSM3591204, GSM3591205, GSM3591206, GSM3591207, GSM3591208, GSM3591209, GSM3591210, GSM3591211, GSM3591212, GSM3591213, GSM3591214, GSM3591215, GSM3591216, GSM3591217, GSM3591218, GSM3591219, GSM3591220, GSM3591221, GSM3591222, GSM3591223, GSM3591224, GSM3591225, GSM3591226, GSM3591227, GSM3591228, GSM3591229, GSM3591230, GSM3591231, GSM3591232, GSM3591233, GSM3591234, GSM3591235, GSM3591236, GSM3591237, GSM3591238, GSM3591239, GSM3591240, GSM3591241, GSM3591242, GSM3591243, GSM3591244, GSM3591245, GSM3591246, GSM3591247, GSM3591248, GSM3591249, GSM3591250...
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You can also download a list of all accessions here
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| Series (118)
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| GSE75818 |
Spatial organization shapes the turnover of a bacterial transcriptome |
| GSE90485 |
A bacterial global regulator forms a prion |
| GSE95567 |
In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding |
| GSE96573 |
Reduced protein expression in a virus attenuated by codon deoptimization |
| GSE104504 |
Crosstalk between global regulators CRP and FIS in E. coli. |
| GSE104505 |
CRP and FIS |
| GSE107327 |
E. coli MazF does not create specialized ribosomes that translate leaderless mRNAs, but instead blocks rRNA maturation and ribosome biogenesis [RNA-seq] |
| GSE107328 |
E. coli MazF does not create specialized ribosomes that translate leaderless mRNAs, but instead blocks rRNA maturation and ribosome biogenesis [Ribo-Seq] |
| GSE107330 |
E. coli MazF does not create specialized ribosomes that translate leaderless mRNAs, but instead blocks rRNA maturation and ribosome biogenesis |
| GSE108727 |
Assessment of Variant Abundance by Massively Parallel Sequencing for PTEN and TPMT |
| GSE109766 |
High-resolution RNA 3’-ends mapping of bacterial rho-dependent transcripts |
| GSE111874 |
Escherichia coli Lrp regulates one-third of the genome via direct, cooperative, and indirect paths |
| GSE111962 |
RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications |
| GSE117186 |
Topo-Seq application for topoisomerases binding sites identification with a single-nucleotide resolution |
| GSE117737 |
Full-length RNA profiling reveals pervasive bidirectional transcription terminators in bacteria |
| GSE117939 |
High throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites |
| GSE119454 |
Assembly and functionality of the ribosome with tethered subunits |
| GSE120240 |
Massively Parallel Reporter Assay for pluripotency factors in mESCs |
| GSE121927 |
Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing |
| GSE122286 |
In vivo analysis of Influenza A mRNA secondary structures identifies critical regulatory motifs |
| GSE125110 |
Complete genome sequence of Escherichia coli C - old model organism with a new application in biofilm research |
| GSE126081 |
Transcriptome profiling in an Escherichia coli strain collection |
| GSE128812 |
Systematic detection of amino acid substitutions in proteome reveals a mechanistic basis of ribosome errors and selection for translation fidelity |
| GSE133607 |
Independent component analysis of E. coli’s transcriptome reveals the cellular processes which respond to heterologous gene expression |
| GSE134324 |
High throughput ribosome profiling of E. coli expressing a library of heterologous proteins |
| GSE135717 |
An Improved Platform for Functional Assessment of Large Protein Libraries in Mammalian Cells |
| GSE135946 |
K5 capsule and lipopolysaccharide are important in resistance to T4 phage attack in probiotic E. coli strain Nissle 1917 |
| GSE137362 |
Collateral fitness effects of mutations |
| GSE137483 |
Impact of urine from cranberry-treated volunteers on global gene expression of uropathogenic Escherichia coli |
| GSE138088 |
Comparative analysis of global transcriptional profile of Escherichia coli and Schizosaccharomyces pombe in respiratory and fermentative growth: Inferring the evolution of analog circuits of post-transcriptional regulation |
| GSE139983 |
From coarse to fine: The absolute Escherichia coli proteome under diverse growth conditions |
| GSE141018 |
Prokaryotic Single-Cell RNA Sequencing by In Situ Combinatorial Indexing |
| GSE141320 |
Stress induces the transcription of toxin-antitoxin systems but does not activate toxin |
| GSE142291 |
Dynamic landscape of protein occupancy across the Escherichia coli chromosome |
| GSE142656 |
A simple, cost-effective, and robust method for rRNA depletion in RNA-sequencing studies |
| GSE143807 |
Influence of the putative transcription factor ClbR and the thioesterase ClbQ on colibactin synthesis regulation and characterization of critical transcription start sites in Escherichia coli |
| GSE144029 |
Expression of E. coli RNase toxins |
| GSE144030 |
E.coli toxin-antitoxin systems |
| GSE144068 |
RNA sequencing of Escherichia coli Nissle 1917 after HOCl stress |
| GSE144795 |
The serotonin neurotransmitter modulates virulence of enteric pathogens |
| GSE144816 |
Understanding the roles of dksA and greA in inorganic polyphosphate accumulation in Escherichia coli |
| GSE145630 |
Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems |
| GSE147758 |
Thymidine starvation |
| GSE147760 |
Tn-Seq Survival Profiling |
| GSE149024 |
Inactivation of RNase P in Escherichia coli significantly changes post-transcriptional RNA metabolism |
| GSE150034 |
Genome-wide effects of the antimicrobial peptide apidaecin on translation termination |
| GSE151327 |
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements |
| GSE152974 |
Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli |
| GSE153028 |
Deciphering the transcriptional changes in Escherichia coli strains C41(DE3) and C43(DE3) that makes them a superior choice for membrane protein production. |
| GSE153497 |
RNA degradation analysis reveals ribosome dynamics in complex microbiome samples |
| GSE154563 |
SHAPE analysis of RNA structure in living cells with unprecedented accuracy |
| GSE157942 |
Generation of Escherichia coli Enhanced Acetate Utilization through Compensatory ATP Consumption via Adaptive Laboratory Evolution |
| GSE158570 |
Genome-wide tracking of Escherichia coli DNA polymerase V to the lagging strand during the SOS response |
| GSE158637 |
Spacer prioritization in CRISPR-Cas9 immunity is enabled by the leader RNA |
| GSE159409 |
An inducible CRISPR-interference library for genetic interrogation of Saccharomyces cerevisiae biology |
| GSE159469 |
Multidimensional PTEN missense variant analysis reveals variant subgroups including potential dominant negatives |
| GSE161708 |
Differential transcription in E. coli WT vs. fum null mutants in response to DNA damage induction |
| GSE164308 |
Landscape of transcriptional and translational changes over 22 years of bacterial adaptation |
| GSE165812 |
Information Content Differentiates Enhancers From Silencers in Mouse Photoreceptors |
| GSE166938 |
Next Generation Sequencing of bacterial surface-displayed ENAH EVH1 ligand peptides after a FACS titration sort (MassTitr) |
| GSE166974 |
Transgenesis of mammalian PABP reveals new role of mRNA polyadenylation in general stress response in Escherichia coli |
| GSE168963 |
Transcriptome RNA Sequencing Data Set of Differential Gene Expression in Escherichia Coli BW25113 SlyA Wild Type and Mutant Strains |
| GSE174575 |
Bacterial Heterochromatin Formation Through Liquid-Liquid Phase Separation |
| GSE180796 |
Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation |
| GSE180830 |
Regulatory perturbations of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity |
| GSE181915 |
ChIP-Seq of topoisomerase I in E. coli DY330 |
| GSE181945 |
Genome-wide strand-specific R-loops mapping in E. coli DY330 using DRIP-Seq |
| GSE182473 |
Genome-wide strand-specific mapping of cleavage sites induced by topoisomerase I in E. coli |
| GSE182850 |
ChIP-Seq of RNAP in E. coli DY330 |
| GSE183114 |
Selective recruitment of the AAA+ ATPase TnsC increases the fidelity of Type I-F CRISPR RNA-guided transposition |
| GSE183363 |
Porin-mediated passage of negamycin across the outer membrane of Escherichia coli |
| GSE184372 |
Simultaneous Detection of DNA Adenine and Cytosine Methylation using NT-seq [series1: no enrichment] |
| GSE184373 |
Simultaneous Detection of DNA Adenine and Cytosine Methylation using NT-seq [series2: 6mA DIP enrichment] |
| GSE184374 |
Simultaneous Detection of DNA Adenine and Cytosine Methylation using NT-seq |
| GSE185892 |
There is no evidence that E. coli SymE cleaves RNA [RNA-seq] |
| GSE188170 |
Ferric Citrate Uptake is a Virulence Factor in Uropathogenic Escherichia coli |
| GSE189154 |
Transcriptomic measurement of Escherichia coli under aerobic and microaerobic conditions |
| GSE189181 |
Ubiquitous mRNA decay fragments in E. coli redefine the functional transcriptome |
| GSE189206 |
Genome-wide promoter assembly mechanisms in E. coli measured at single base resolution |
| GSE193270 |
Context-specific translation arrest by evernimicin, an inhibitor of tRNA accommodation |
| GSE193736 |
A genome-scale screen for synthetic drivers of T-cell proliferation |
| GSE197379 |
RNA-sequencing of bicyclomycin treated Escherichia coli str. O157:H7 str. Sakai |
| GSE198120 |
High throughput analysis of binding of E. coli Lrp mutants |
| GSE199248 |
Landscapes of collateral fitness effects of mutations in antibiotic resistance genes |
| GSE202160 |
MRT-ModSeq - Rapid detection of RNA modifications with MarathonRT |
| GSE205384 |
Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli |
| GSE206423 |
BaM-seq and TBaM-seq, highly multiplexed and targeted RNA-seq protocols for rapid, low-cost library generation from bacterial samples [BaM-seq] |
| GSE206425 |
OnePot-seq and OPT-seq, highly multiplexed and targeted RNA-seq protocols for rapid, low-cost library generation |
| GSE211960 |
Effect of hPNPase on Escherichia coli transcritome |
| GSE212408 |
Global profiling of the RNA and protein complexes of Escherichia coli by size exclusion chromatography followed by RNA sequencing and mass spectrometry (SEC-seq) |
| GSE215029 |
Tyrosine phosphorylation controlled poly(A) polymerase I activity regulates general stress response in bacteria |
| GSE217004 |
Cas9 off-target binding to the promoter of bacterial genes leads to silencing and toxicity [ChIP-Seq] |
| GSE217006 |
Cas9 off-target binding to the promoter of bacterial genes leads to silencing and toxicity |
| GSE217678 |
Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters [bulkMPRA_PolIII_linBC_vs_oBC] |
| GSE217681 |
Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters [plasmid_libraries_subassembly] |
| GSE217690 |
Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters |
| GSE217715 |
A quantitative model for the transcriptional landscape of the bacterial cell cycle |
| GSE221825 |
Effect of hPNPase on Escherichia coli transcritome after addition of rifampicin |
| GSE222589 |
Survival of E. coli O104:H4 Strain C227/11Φcu in a Soil Microenvironment is Associated with a Broad Time-Dependent Τranscriptional Activity of Metabolic Genes |
| GSE223404 |
Bacterial mRNA sequencing through targeted rRNA depletion for efficient RNA-seq in varied species and co-cultures |
| GSE223913 |
Pol II pausing is a milestone on the road to complex animals |
| GSE224463 |
The timing of transcription of RpoS-dependent genes varies across multiple stresses |
| GSE225335 |
Enhanced genome-wide knockout screens in bacteria with CRISPR base editors |
| GSE228489 |
A new antibiotic from an uncultured bacterium binds to an immutable target |
| GSE234211 |
A phage-encoded RNA-binding protein inhibits the antiviral activity of a toxin-antitoxin system |
| GSE235465 |
The global anaerobic metabolism regulator fnr is necessary for the degradation of food dyes and drugs by Escherichia coli |
| GSE235964 |
The distinct transcriptome of virulence-associated phylogenetic group B2 Escherichia coli |
| GSE237136 |
Systematic interrogation of CRISPR-based antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide-, and strain-specific factors influencing antimicrobial activity |
| GSE241353 |
Active learning of enhancer and silencer regulatory grammar in photoreceptors |
| GSE243699 |
RpoS acts as a global repressor of virulence gene expression in Escherichia coli O104:H4 and enteroaggregative E. coli |
| GSE245260 |
Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters [plasmid libraries subassembly, v2] |
| GSE245326 |
The genetic architecture of protein interaction affinity and specificity |
| GSE245749 |
TnpB homologs exapted from transposons are RNA-guided transcription factors |
| GSE255764 |
Analysis of the stress response after induction of the dormancy-inducing membrane toxin TisB in Escherichia coli |
| GSE261342 |
Antagonistic conflict between transposon-encoded introns and guide RNAs (RIP-Seq) |
| GSE261343 |
Antagonistic conflict between transposon-encoded introns and guide RNAs (RNA-Seq) |
| GSE261344 |
Antagonistic conflict between transposon-encoded introns and guide RNAs |
| GSE267531 |
The transcriptional response to low temperature is weakly conserved across Enterobacteriales |
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| Supplementary data files not provided |
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