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Platform GPL158 Query DataSets for GPL158
Status Public on Oct 01, 2002
Title Atlas Rat cDNA Expression Array (Cat. #7738-1)
Technology type spotted DNA/cDNA
Distribution commercial
Organism Rattus norvegicus
Manufacturer BD Biosciences Clontech
Manufacture protocol see manufacturer's web site
 
Description Nylon, broad-coverage rat cDNA array. The cDNA fragments (200-600 bp) are PCR-amplified using gene-specific primers, and are selected so that they lack repetitive elements and have minimal homology with other genes on the array.
 
Web link http://www.clontech.com/atlas/index.shtml
Submission date Apr 24, 2002
Last update date Apr 09, 2008
Organization BD Biosciences Clontech
E-mail(s) tech@clontech.com
Phone 877-232-8995
URL http://www.clontech.com
Street address 1020 East Meadow Circle
City Palo Alto
State/province CA
ZIP/Postal code 94303-4230
Country USA
 
Samples (5) GSM26190, GSM26191, GSM26192, GSM26193, GSM26194
Series (1)
GSE1509 Atlas Rat cDNA Expression Array - Zipf's Normalization

Data table header descriptions
ID unique reference number used by BD Biosciences Clontech to identify each gene in collection
GENE_NAME set of names commonly used for the gene, based on the current literature
COORDINATE array coordinate
GB_LIST GenBank accession number
SP_LIST SwissProt accession number
GENE Entrez GENE ID
DESC description
CLASSIFICATION set of functional classifications for the gene

Data table
ID GENE_NAME COORDINATE GB_LIST SP_LIST GENE DESC CLASSIFICATION
R101 adenomatous polyposis coli protein (APC) A1a D38629 P70478 24205 Adenomatosis polyposis coli FT00 SC00 SE00
R512 DCC; netrin receptor; immunoglobulin gene superfamily member; former tumor suppressor protein candidate A1b U68725 Q63155 25311 Deleted in colcorectal cancer (rat homolog) FR05 SB00
R582 ezrin; cytovillin 2; villin 2 (VIL2) A1c X67788 P31977 54319 ezrin FW00 SC00 SK00
R508 mothers against decapentaplegic homolog 1 (MADH1; rSMAD1) A1d U66478 P97588 25671 MAD (mothers against decapentaplegic, Drosophila) homolog 1 FB03 SC00 SN00
R107 neurofibromin; neurofibromatosis protein type I (NF1) A1e D45201 P97526 24592 Neurofibromatosis type 1 FT05 SC00
R499 MOESIN-ezrin-radixin-like protein (MERLIN); schwannomin (SCH); neurofibromatosis 2 (NF2) A1f U61772 Q63648 25744 Neurofibromatosis 2 FG00 FW00 SK00 SC00
R120 p130; retinoblastoma gene product-related protein Rb2/p130; cell cycle regulator A1g D55627 O55081 p130; retinoblastoma gene product-related protein Rb2/p130; cell cycle regulator FB03 SN00
R553 cellular tumor antigen p53 (TP53) A1h X13058 P10361 cellular tumor antigen p53 (TP53) FG00 FO10 FB03 SN00
R070 retinoblastoma protein (RB) A1i D25233 Q63527 24708 Retinoblastoma 1 (including osteosarcoma) FG00 FB03 SN00
R493 maspin; protease inhibitor 5 (PI5) A1j U58857 P70564 maspin; protease inhibitor 5 (PI5) FU07 SC00 SF00
R444 Von Hippel-Lindau tumor suppressor protein (VHL) A1k U14746 Q64259, Q64197 Von Hippel-Lindau tumor suppressor protein (VHL) FB05 FU00 SC00 SN00 SE00
R583 Wilms' tumor protein homolog 1 (WT1) A1l X69716 P49952 Wilms' tumor protein homolog 1 (WT1) FG00 FB03 FV05 SN00
R509 mothers against decapentaplegic homolog 3 (MADH3; rSMAD3) A1m U66479 O09144, O09064 25631 MAD (mothers against decapentaplegic, Drosophila) homolog 3 FB03 SC00 SN00
R412 transforming growth factor beta 3 (TGF-beta3); antiproliferative growth factor A1n U03491 Q07258 25717 Transforming growth factor, beta 3 FS02 SF00
R352 TGF-beta receptor type III; betaglycan; candidate tumor suppressor gene A2a M77809 P26342 29610 transforming growth factor, beta receptor III FR01 SB00 ST00 SF00
R330 prohibitin (PHB); B-cell receptor-associated protein 32 (BAP32) A2b M61219 P24142 prohibitin (PHB); B-cell receptor-associated protein 32 (BAP32) FX00 SC00 SM00
R010 Myc-Max-interacting tumor suppressor (MXI1) A2c AF003008 O09015 25701 Max interacting protein 1 FB03 SN00
R715 thyroid hormone receptor alpha 1 (THRA1); erbA proto-oncogene A2d X12744 P16416, P10685, Q63107 thyroid hormone receptor alpha 1 (THRA1); erbA proto-oncogene FV05 FB03 FG00 SN00
R549 c-fos proto-oncogene A2e X06769 P12841 c-fos proto-oncogene FB02 SN00
R601 c-myc proto-oncogene A2f Y00396 P09416 24577 Avian myelocytomatosis viral (v-myc) oncogene homolog FB02 FG00 SN00

Total number of rows: 597

Table truncated, full table size 86 Kbytes.




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