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Platform GPL15733 Query DataSets for GPL15733
Status Public on Jun 23, 2012
Title [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [CDF: MoGene10stv1_Mm_ENTREZG_12.1.0]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site (www.affymetrix.com),
 
Description This Platform is identical to GPL6246, but a custom CDF environment was used to extract data. The CDF and other chip library files are linked below as supplementary files.
 
Web link http://brainarray.mbni.med.umich.edu/brainarray/Database/CustomCDF/genomic_curated_CDF.asp
Submission date Jun 22, 2012
Last update date Jan 17, 2013
Contact name Timothy Michael Stearns
E-mail(s) tim.stearns@jax.org
Organization name The Jackson Laboratory
Department Computational Sciences
Lab Statistics
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Samples (20) GSM951553, GSM951554, GSM951555, GSM951556, GSM951557, GSM951558 
Series (4)
GSE38891 Deregulated sex chromosome gene expression with male germ cell-specific loss of Dicer1 (gene array data)
GSE38896 Deregulated sex chromosome gene expression with male germ cell-specific loss of Dicer1
GSE44110 Behavioural and functional characterization of Kv10.1 (Eag1) knockout mice
Relations
Alternative to GPL6246

Data table header descriptions
ID
ENTREZ_GENE_ID Entrez Gene ID
Chr_Build37 Chromosome
RANGE_GB RefSeq accession.version of chromosome (NCBI Build 37; UCSC mm9)
RANGE_START Start coordinate relative to RANGE_GB
RANGE_END End coordinate relative to RANGE_GB
RANGE_STRAND Strand relative to RANGE_GB
Probe_Num Number of probes
Symbol Gene symbol
Name Gene name
Type Type of gene
IDs Identifiers
MGI_ID Mouse Genome Informatics (MGI) identifier
Ensembl_ID Ensembl identifier
SPOT_ID

Data table
ID ENTREZ_GENE_ID Chr_Build37 RANGE_GB RANGE_START RANGE_END RANGE_STRAND Probe_Num Symbol Name Type IDs MGI_ID Ensembl_ID SPOT_ID
100009600_at 100009600 9 NC_000075.5 20871524 20871537 -1 25 Glp1 GATA-like 1 protein-coding MGI:3696042 MGI:3696042
100009609_at 100009609 7 NC_000073.5 92097548 92097684 -1 50 Vmn2r65 vomeronasal 2, receptor 65 protein-coding MGI:3642776|Ensembl:ENSMUSG00000070600 MGI:3642776 Ensembl:ENSMUSG00000070600
100012_at 100012 4 NC_000070.5 143752480 143752539 -1 26 Oog3 oogenesin 3 protein-coding MGI:2684047|Ensembl:ENSMUSG00000050810 MGI:2684047 Ensembl:ENSMUSG00000050810
100017_at 100017 4 NC_000070.5 134323731 134323862 -1 26 Ldlrap1 low density lipoprotein receptor adaptor protein 1 protein-coding MGI:2140175|Ensembl:ENSMUSG00000037295 MGI:2140175 Ensembl:ENSMUSG00000037295
100019_at 100019 4 NC_000070.5 32861115 32862192 1 103 Mdn1 midasin homolog (yeast) protein-coding MGI:1926159|Ensembl:ENSMUSG00000058006 MGI:1926159 Ensembl:ENSMUSG00000058006
100033459_at 100033459 1 NC_000067.5 175627536 175628523 1 8 E430029J22Rik RIKEN cDNA E430029J22 gene unknown MGI:2442822|Ensembl:ENSMUSG00000066677 MGI:2442822 Ensembl:ENSMUSG00000066677
100034251_at 100034251 11 NC_000077.5 83519570 83519771 1 27 OTTMUSG00000000971 predicted gene, OTTMUSG00000000971 protein-coding MGI:3649773|Ensembl:ENSMUSG00000069792 MGI:3649773 Ensembl:ENSMUSG00000069792
100036521_at 100036521 6 NC_000072.5 8376999 8378767 1 8 LOC100036521 hypothetical gene LOC100036521 protein-coding
100037258_at 100037258 14 NC_000080.5 119377407 119379121 1 26 Dnajc3 DnaJ (Hsp40) homolog, subfamily C, member 3 protein-coding MGI:107373|Ensembl:ENSMUSG00000022136|Ensembl:ENSMUSG00000075474 MGI:107373 Ensembl:ENSMUSG00000022136,Ensembl:ENSMUSG00000075474
100037278_at 100037278 8 NC_000074.5 74131466 74132048 1 27 Bcnp1 BCNP1 homolog protein-coding MGI:3686743|Ensembl:ENSMUSG00000043243 MGI:3686743 Ensembl:ENSMUSG00000043243
100038380_at 100038380 14 NC_000080.5 122890374 122891362 1 25 ENSMUSG00000075465 predicted gene, ENSMUSG00000075465 protein-coding MGI:3642026|Ensembl:ENSMUSG00000075465 MGI:3642026 Ensembl:ENSMUSG00000075465
100038429_at 100038429 17 NC_000083.5 27480577 27480853 1 25 ENSMUSG00000073430 predicted gene, ENSMUSG00000073430 protein-coding MGI:3642687|Ensembl:ENSMUSG00000073430 MGI:3642687 Ensembl:ENSMUSG00000073430
100038486_at 100038486 3 NC_000069.5 17690176 17690304 -1 25 ENSMUSG00000074674 predicted gene, ENSMUSG00000074674 protein-coding MGI:3642301|Ensembl:ENSMUSG00000074674 MGI:3642301 Ensembl:ENSMUSG00000074674
100038570_at 100038570 11 NC_000077.5 116529379 116529703 1 22 OTTMUSG00000003947 predicted gene, OTTMUSG00000003947 protein-coding MGI:3649529|Ensembl:ENSMUSG00000075410 MGI:3649529 Ensembl:ENSMUSG00000075410
100038598_at 100038598 11 NC_000077.5 79806365 79806388 -1 25 ENSMUSG00000072631 predicted gene, ENSMUSG00000072631 protein-coding MGI:3642888|Ensembl:ENSMUSG00000072631 MGI:3642888 Ensembl:ENSMUSG00000072631
100038600_at 100038600 11 NC_000077.5 96325403 96325861 -1 25 OTTMUSG00000001775 predicted gene, OTTMUSG00000001775 protein-coding MGI:3649352|Ensembl:ENSMUSG00000075586 MGI:3649352 Ensembl:ENSMUSG00000075586
100038618_at 100038618 14 NC_000080.5 75332206 75333050 1 24 ENSMUSG00000075519 predicted gene, ENSMUSG00000075519 protein-coding MGI:3642004|Ensembl:ENSMUSG00000075519 MGI:3642004 Ensembl:ENSMUSG00000075519
100038635_at 100038635 9 NC_000075.5 108551643 108557055 1 23 ENSMUSG00000074075 predicted gene, ENSMUSG00000074075 protein-coding MGI:3642291|Ensembl:ENSMUSG00000074075 MGI:3642291 Ensembl:ENSMUSG00000074075
100038680_at 100038680 X NC_000086.6 115259130 115259440 -1 13 ENSMUSG00000072994 predicted gene, ENSMUSG00000072994 protein-coding MGI:3642203|Ensembl:ENSMUSG00000072994 MGI:3642203 Ensembl:ENSMUSG00000072994
100038683_at 100038683 13 NC_000079.5 65361579 65362134 1 25 ENSMUSG00000074847 predicted gene, ENSMUSG00000074847 protein-coding MGI:3642324|Ensembl:ENSMUSG00000074847 MGI:3642324 Ensembl:ENSMUSG00000074847

Total number of rows: 20985

Table truncated, full table size 3796 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15733_MoGene10stv1_Mm_ENTREZG.cdf.gz 8.7 Mb (ftp)(http) CDF
GPL15733_MoGene10stv1_Mm_ENTREZG_desc.annot.txt.gz 102.7 Kb (ftp)(http) TXT
GPL15733_MoGene10stv1_Mm_ENTREZG_desc.txt.gz 242.3 Kb (ftp)(http) TXT
GPL15733_MoGene10stv1_Mm_ENTREZG_mapping.txt.gz 4.5 Mb (ftp)(http) TXT
GPL15733_MoGene10stv1_Mm_ENTREZG_probe_tab.txt.gz 7.8 Mb (ftp)(http) TXT

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