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Status |
Public on Jun 19, 2013 |
Title |
[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_Hs_ENST] |
Technology type |
in situ oligonucleotide |
Distribution |
commercial |
Organism |
Homo sapiens |
Manufacturer |
Affymetrix |
Manufacture protocol |
See manufacturer's web site
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Description |
custom CDF: HuGene10stv1_Hs_ENST.cdf (version 13, defining probe sets for transcripts from Ensembl core database version 58)
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Submission date |
Apr 11, 2012 |
Last update date |
Jun 21, 2013 |
Contact name |
Johannes Rainer |
E-mail(s) |
johannes.rainer@eurac.edu
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Organization name |
Eurac Researc
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Department |
Institute for Biomedicine
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Lab |
Biomedical Informatics
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Street address |
Via A. Volta 21
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City |
Bolzano |
ZIP/Postal code |
39100 |
Country |
Italy |
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Samples (6) |
GSM912876, GSM912877, GSM912878, GSM912879, GSM912880, GSM912881 |
Series (1) |
GSE37172 |
EpCAM overexpression prolongs proliferative capacity of primary human breast epithelial cells and supports hyperplastic growth |
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Relations |
Alternative to |
GPL6244 (alternative CDF [official]) |
Data table header descriptions |
ID |
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ORF |
Entrez gene ID |
gene_id |
Ensembl gene identifier |
gene_name |
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chromosome |
chromosome_name |
Gene_symbol |
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SPOT_ID |
Ensembl transcript identifier |
coord_system |
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probe_count |
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gene_biotype |
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transcript_biotype |
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Data table |
ID |
ORF |
gene_id |
gene_name |
chromosome |
Gene_symbol |
SPOT_ID |
coord_system |
probe_count |
gene_biotype |
transcript_biotype |
ENST00000000233_at |
381 |
ENSG00000004059 |
ARF5 |
7 |
ARF5 |
ENST00000000233 |
chromosome |
30 |
protein_coding |
protein_coding |
ENST00000000412_at |
4074 |
ENSG00000003056 |
M6PR |
12 |
M6PR |
ENST00000000412 |
chromosome |
18 |
protein_coding |
protein_coding |
ENST00000000442_at |
2101 |
ENSG00000173153 |
ESRRA |
11 |
ESRRA |
ENST00000000442 |
chromosome |
13 |
protein_coding |
protein_coding |
ENST00000001008_at |
2288 |
ENSG00000004478 |
FKBP4 |
12 |
FKBP4 |
ENST00000001008 |
chromosome |
21 |
protein_coding |
protein_coding |
ENST00000001146_at |
56603 |
ENSG00000003137 |
CYP26B1 |
2 |
CYP26B1 |
ENST00000001146 |
chromosome |
27 |
protein_coding |
protein_coding |
ENST00000002125_at |
55471 |
ENSG00000003509 |
C2orf56 |
2 |
C2orf56 |
ENST00000002125 |
chromosome |
40 |
protein_coding |
protein_coding |
ENST00000002165_at |
2519 |
ENSG00000001036 |
FUCA2 |
6 |
FUCA2 |
ENST00000002165 |
chromosome |
23 |
protein_coding |
protein_coding |
ENST00000002501_at |
79007 |
ENSG00000003249 |
DBNDD1 |
16 |
DBNDD1 |
ENST00000002501 |
chromosome |
26 |
protein_coding |
protein_coding |
ENST00000002596_at |
9957 |
ENSG00000002587 |
HS3ST1 |
4 |
HS3ST1 |
ENST00000002596 |
chromosome |
27 |
protein_coding |
protein_coding |
ENST00000002829_at |
6405 |
ENSG00000001617 |
SEMA3F |
3 |
SEMA3F |
ENST00000002829 |
chromosome |
44 |
protein_coding |
protein_coding |
ENST00000003084_at |
1080 |
ENSG00000001626 |
CFTR |
7 |
CFTR |
ENST00000003084 |
chromosome |
42 |
protein_coding |
protein_coding |
ENST00000003100_at |
1595 |
ENSG00000001630 |
CYP51A1 |
7 |
CYP51A1 |
ENST00000003100 |
chromosome |
6 |
protein_coding |
protein_coding |
ENST00000003302_at |
57646 |
ENSG00000048028 |
USP28 |
11 |
USP28 |
ENST00000003302 |
chromosome |
31 |
protein_coding |
protein_coding |
ENST00000003583_at |
90529 |
ENSG00000001460 |
C1orf201 |
1 |
C1orf201 |
ENST00000003583 |
chromosome |
22 |
protein_coding |
protein_coding |
ENST00000003607_at |
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ENSG00000004142 |
POLDIP2 |
17 |
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ENST00000003607 |
chromosome |
30 |
processed_transcript |
processed_transcript |
ENST00000003834_at |
23098 |
ENSG00000004139 |
SARM1 |
17 |
SARM1 |
ENST00000003834 |
chromosome |
33 |
protein_coding |
protein_coding |
ENST00000003912_at |
57185 |
ENSG00000001461 |
NIPAL3 |
1 |
NIPAL3 |
ENST00000003912 |
chromosome |
20 |
protein_coding |
protein_coding |
ENST00000004103_at |
55365 |
ENSG00000002933 |
TMEM176A |
7 |
TMEM176A |
ENST00000004103 |
chromosome |
28 |
protein_coding |
protein_coding |
ENST00000004531_at |
6542 |
ENSG00000003989 |
SLC7A2 |
8 |
SLC7A2 |
ENST00000004531 |
chromosome |
30 |
protein_coding |
protein_coding |
ENST00000004921_at |
6362 |
ENSG00000006074 |
CCL18 |
17 |
CCL18 |
ENST00000004921 |
chromosome |
25 |
protein_coding |
protein_coding |
Total number of rows: 105342
Table truncated, full table size 12150 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL15424_HuGene10stv1_Hs_ENST.cdf.gz |
31.6 Mb |
(ftp)(http) |
CDF |
GPL15424_HuGene10stv1_Hs_ENST.cdf.txt.gz |
12.2 Mb |
(ftp)(http) |
TXT |
GPL15424_HuGene10stv1_Hs_ENST_annotation.txt.gz |
2.4 Mb |
(ftp)(http) |
TXT |
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