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Status
Public on Jun 30, 2010
Title
Agilent-018343 Whole Podospora anserina Genome Microarray v.3 4x44K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Podospora anserina Manufacturer
Agilent
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Podospora anserina 60 mers Oligonucleotide Microarray by Agilent Technologies : microarray with a unique probe per CDS. The final array design contained 10,539 probes for nuclear CDS and 17 mitochondrial CDS probes. Each probe was replicated four times on each 44K array.http://podospora.igmors.u-psud.fr/padb/index.php
Contributor(s)
Bidard F , Imbeaud S , Reymond N , Debuchy R , Delacroix H , Berteaux V , Silar P , Clavé C Submission date
Mar 01, 2010
Last update date
Jun 30, 2010
Contact name
Frederique Bidard
E-mail(s)
frederique.bidard-michelot@ifpen.fr Organization name
Institut de Génétique et Microbiologie UMR 8621
Department
SIGNAL TRANSDUCTION, REPRODUCTION & DEGENERATIVE PROCESSES
Street address
Bâtiment 400
City
Orsay
ZIP/Postal code
91405
Country
France
Samples (164)
GSM520502 , GSM520503 , GSM520504 , GSM520505 , GSM520506 , GSM520507
GSM520508 ,
GSM533042 ,
GSM533043 ,
GSM533044 ,
GSM533045 ,
GSM533046 ,
GSM533047 ,
GSM533048 ,
GSM533049 ,
GSM533050 ,
GSM533051 ,
GSM533052 ,
GSM533053 ,
GSM533054 ,
GSM533055 ,
GSM533056 ,
GSM533057 ,
GSM533058 ,
GSM533059 ,
GSM533060 ,
GSM533061 ,
GSM533062 ,
GSM533063 ,
GSM533064 ,
GSM533065 ,
GSM533066 ,
GSM533067 ,
GSM533068 ,
GSM533069 ,
GSM533070 ,
GSM533071 ,
GSM533072 ,
GSM533073 ,
GSM533074 ,
GSM533075 ,
GSM533076 ,
GSM533077 ,
GSM533078 ,
GSM533079 ,
GSM533080 ,
GSM533081 ,
GSM533082 ,
GSM533083 ,
GSM533084 ,
GSM533085 ,
GSM533086 ,
GSM533087 ,
GSM533088 ,
GSM533089 ,
GSM540502 ,
GSM540503 ,
GSM540504 ,
GSM540505 ,
GSM540506 ,
GSM540507 ,
GSM540508 ,
GSM540509 ,
GSM540510 ,
GSM540511 ,
GSM540512 ,
GSM540513 ,
GSM540514 ,
GSM540515 ,
GSM540516 ,
GSM540517 ,
GSM540518 ,
GSM540519 ,
GSM540520 ,
GSM540521 ,
GSM540522 ,
GSM540523 ,
GSM540524 ,
GSM540525 ,
GSM540526 ,
GSM540527 ,
GSM540528 ,
GSM540529 ,
GSM540530 ,
GSM540531 ,
GSM540532 ,
GSM540533 ,
GSM540534 ,
GSM540535 ,
GSM540536 ,
GSM540537 ,
GSM540538 ,
GSM540539 ,
GSM540540 ,
GSM540541 ,
GSM540542 ,
GSM540543 ,
GSM540544 ,
GSM540545 ,
GSM540546 ,
GSM540547 ,
GSM540548 ,
GSM540549 ,
GSM674991 ,
GSM674992 ,
GSM674993 ,
GSM674994 ,
GSM674995 ,
GSM674996 ,
GSM674997 ,
GSM674998 ,
GSM674999 ,
GSM675000 ,
GSM675001 ,
GSM675002 ,
GSM675003 ,
GSM675004 ,
GSM675005 ,
GSM675006 ,
GSM1243310 ,
GSM1243311 ,
GSM1243312 ,
GSM1243313 ,
GSM1243314 ,
GSM1243315 ,
GSM1243316 ,
GSM1243317 ,
GSM1243318 ,
GSM1243319 ,
GSM1243320 ,
GSM1243321 ,
GSM1243322 ,
GSM1243323 ,
GSM1243324 ,
GSM1243325 ,
GSM1243326 ,
GSM1243327 ,
GSM1243328 ,
GSM1243329 ,
GSM1243330 ,
GSM1243331 ,
GSM1243332 ,
GSM1243333 ,
GSM1243334 ,
GSM1243335 ,
GSM1243336 ,
GSM1243337 ,
GSM2804389 ,
GSM2804390 ,
GSM2804391 ,
GSM2804392 ,
GSM2804393 ,
GSM2804394 ,
GSM2804395 ,
GSM2804396 ,
GSM2804397 ,
GSM2804398 ,
GSM2804399 ,
GSM2804400 ,
GSM2804401 ,
GSM2804402 ,
GSM2804403 ,
GSM2804404 ,
GSM2804405 Series (6)
GSE20734 A general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina
GSE21331 The transcriptional response to the inactivation of the PaMpk1 and PaMpk2 MAP kinase pathways in Podospora anserina
GSE21659 The transcriptional profilling of the thermosensitive self-incompatible het-R het-V strain undergoing cell death by incompatibility
GSE27297 Genome-wide gene expression profiling of fertilization competent mycelium in opposite mating types in the heterothallic fungus Podospora anserina.
GSE51360 A genetic and functional investigation of the Zn2Cys6 transcription factors RSE2 and RSE3 in Podospora anserina
GSE104632 Transcriptional analyses of two mutants of Podospora anserina impaired for sexual development
Data table header descriptions ID Agilent feature number
ROW Row
COL Column
NAME NAME
GENE_NAME Gene Name
CONTROL_TYPE Control type
SEQUENCE Sequence
SPOT_ID
Data table ID ROW COL NAME GENE_NAME CONTROL_TYPE SEQUENCE SPOT_ID 1
1
1
GE_BrightCorner
GE_BrightCorner
1
CONTROL
2
1
2
DarkCorner
DarkCorner
1
CONTROL
3
1
3
DarkCorner
DarkCorner
1
CONTROL
4
1
4
DarkCorner
DarkCorner
1
CONTROL
5
1
5
DarkCorner
DarkCorner
1
CONTROL
6
1
6
DarkCorner
DarkCorner
1
CONTROL
7
1
7
DarkCorner
DarkCorner
1
CONTROL
8
1
8
DarkCorner
DarkCorner
1
CONTROL
9
1
9
DarkCorner
DarkCorner
1
CONTROL
10
1
10
DarkCorner
DarkCorner
1
CONTROL
11
1
11
DarkCorner
DarkCorner
1
CONTROL
12
1
12
PA_03_AA0020818
Pa_3_8680
0
CTCGAGCGCAAGACCTCGTTGGTTTTCACCCTCCTAAAAGCAAGTGTCTACAGCATTGTT
Predicted CDS
13
1
13
PA_06_GA0032364
Pa_6_7967
0
CCTTTCGGCGTGAATACAAATTGTTCCTACCATCCAGACGTCAACCAGGTTGTTTGTGAT
Predicted CDS
14
1
14
PA_02_AA0012350
Pa_2_2560
0
CTTGGTTTCCCACGGATGATGAGTTGAAGGAGTGGAGCAAGAGCACAGACAAGATGGCTT
Predicted CDS
15
1
15
PA_01_AA0005168
Pa_1_9970
0
GGAGCATTCGAGAGCAGTATATCAATCTGTTCCCAAACCCGCGTGGAGAAAATCTACAAA
Predicted CDS
16
1
16
PA_03_AA0021531
Pa_3_10490
0
AGCATCAGTGTCGATGAAGTCACAGATACTGCGACAAGAAAAATCGCTAGAGCTTTCTGG
Predicted CDS
17
1
17
PA_02_AA0012729
Pa_2_3500
0
GGAGGCGGTACAACAGGATATGTGGACGTCACCTAAGGGACAGTGTCCGCTTGCTAGGAT
Predicted CDS
18
1
18
PA_07_AA0038378
Pa_7_2530
0
ATGTTTGGGGCCTTCAGAGCGACGAATTCCCTGAGCGGGGGTCTTCTATGGAAGATCCCA
Predicted CDS
19
1
19
PA_05_AA0028159
Pa_5_3350
0
TAAGCCCTCAAAACCGTGGAGGTTGACGAATGCCTTTGGCCTGTTCTTGATCAATGATTT
Predicted CDS
20
1
20
PA_03_AA0021464
Pa_3_10330
0
TCATCCAGGATGTCCGCGTCGAGGAAGGAAGGACAACATCATGCGCCACTTCAGGACCAA
Predicted CDS
45220 4890 Kbytes .Supplementary data files not provided
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