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Platform GPL10115 Query DataSets for GPL10115
Status Public on Jun 30, 2010
Title Agilent Whole_genome_Podospora anserina_v.2_4X44K (oligonucleotides microarray development)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Podospora anserina
Manufacturer Agilent
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Podospora anserina Oligonucleotide Microarray by Agilent Technologies. Intermediate microarray with 4 different probes per CDS used to select one probe per CDS to develop a custom expression microarray. Barecodes of arrays with this design are 251636610001 to 251636610005.
See Podopora anserina database's web site at http://podospora.igmors.u-psud.fr/padb/index.php
 
Contributor(s) Bidard F, Imbeaud S, Reymond N, Debuchy R, Delacroix H, Berteaux V, Lespinet O, Silar P, Clavé C
Submission date Mar 01, 2010
Last update date Jun 30, 2010
Contact name Frederique Bidard
E-mail(s) frederique.bidard-michelot@ifpen.fr
Organization name Institut de Génétique et Microbiologie UMR 8621
Department SIGNAL TRANSDUCTION, REPRODUCTION & DEGENERATIVE PROCESSES
Street address Bâtiment 400
City Orsay
ZIP/Postal code 91405
Country France
 
Samples (20) GSM520482, GSM520483, GSM520484, GSM520485, GSM520486, GSM520487 
Series (1)
GSE20734 A general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina

Data table header descriptions
ID Agilent feature number
ROW Row
COL Column
NAME Probe Name
GENE_NAME Gene Name
SEQUENCE Probe Sequence
CONTROL_TYPE Control Type
SPOT_ID

Data table
ID ROW COL NAME GENE_NAME SEQUENCE CONTROL_TYPE SPOT_ID
1 1 1 GE_BrightCorner GE_BrightCorner TGCCCGCCTCCCCCACCCCATGATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT pos CONTROL
171 3 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
341 5 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
511 7 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
681 9 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
851 11 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
1021 13 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
1191 15 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
1361 17 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
1531 19 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
1701 21 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
1871 23 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
2041 25 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
2211 27 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
2381 29 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
2551 31 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
2721 33 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
2891 35 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
3061 37 1 DarkCorner DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG pos CONTROL
3231 39 1 PA_01_AA0009812 Pa_1_21600 ACCAATCAGACGCATCATGAACATGGAAGATCCAGACGCTCCAAAGCAAGCTTATCTTGT 0 Predicted CDS

Total number of rows: 45220

Table truncated, full table size 5077 Kbytes.




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