nsv7098699
- Organism: Homo sapiens
- Study:nstd230 (Sugimoto et al. 2023)
- Variant Type:complex chromosomal rearrangement
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 374 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 374 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 195 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 195 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 179 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 179 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 374 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 374 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 195 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 195 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 179 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 179 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 24 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv7098699 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 2,587,592 | 2,587,592 | + |
nsv7098699 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 2,587,592 | 2,587,592 | - |
nsv7098699 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 92,312,271 | 92,312,271 | + |
nsv7098699 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 92,312,274 | 92,312,274 | - |
nsv7098699 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 93,005,323 | 93,005,323 | - |
nsv7098699 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 93,005,324 | 93,005,324 | + |
nsv7098699 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 55,726,540 | 55,726,540 | - |
nsv7098699 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 55,726,543 | 55,726,543 | + |
nsv7098699 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 2,629,276 | 2,629,276 | + | ||
nsv7098699 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 2,629,276 | 2,629,276 | - | ||
nsv7098699 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 93,233,422 | 93,233,422 | + | ||
nsv7098699 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 93,233,425 | 93,233,425 | - | ||
nsv7098699 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 93,926,474 | 93,926,474 | - | ||
nsv7098699 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 93,926,475 | 93,926,475 | + | ||
nsv7098699 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000014.8 | Chr14 | 56,193,258 | 56,193,258 | - | ||
nsv7098699 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000014.8 | Chr14 | 56,193,261 | 56,193,261 | + |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv18792496 | interchromosomal translocation | FHU19-162 | Sequencing | Sequence alignment | nssv18792497, nssv18792498, nssv18792499 |
nssv18792499 | interchromosomal translocation | FHU19-162 | Sequencing | Sequence alignment | nssv18792496, nssv18792497, nssv18792498 |
nssv18792497 | intrachromosomal translocation | FHU19-162 | Sequencing | Sequence alignment | nssv18792496, nssv18792498, nssv18792499 |
nssv18792498 | interchromosomal translocation | FHU19-162 | Sequencing | Sequence alignment | nssv18792496, nssv18792497, nssv18792499 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv18792496 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 2,587,592 | 2,587,592 | - |
nssv18792499 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 2,587,592 | 2,587,592 | + |
nssv18792497 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 92,312,271 | 92,312,271 | + |
nssv18792498 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 92,312,274 | 92,312,274 | - |
nssv18792496 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 93,005,323 | 93,005,323 | - |
nssv18792497 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 93,005,324 | 93,005,324 | + |
nssv18792498 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 55,726,540 | 55,726,540 | - |
nssv18792499 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 55,726,543 | 55,726,543 | + |
nssv18792496 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 2,629,276 | 2,629,276 | - | ||
nssv18792499 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 2,629,276 | 2,629,276 | + | ||
nssv18792497 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 93,233,422 | 93,233,422 | + | ||
nssv18792498 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 93,233,425 | 93,233,425 | - | ||
nssv18792496 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 93,926,474 | 93,926,474 | - | ||
nssv18792497 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 93,926,475 | 93,926,475 | + | ||
nssv18792498 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 56,193,258 | 56,193,258 | - | ||
nssv18792499 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 56,193,261 | 56,193,261 | + |