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dbVar

Database of genomic structural variation

nsv3116615

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:9,189

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 371 SVs from 25 studies. See in: genome view

Remapped(Score: Perfect):9,802,750-9,811,938

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3116615	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000024.10	ChrY	9,802,750	9,811,938
nsv3116615	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000024.9	ChrY	9,640,359	9,649,547

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14102222	deletion	sample180	Oligo aCGH	Probe signal intensity	57
nssv14102241	deletion	sample229	Oligo aCGH	Probe signal intensity	49
nssv14102262	duplication	sample285	Oligo aCGH	Probe signal intensity	67

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14102222	Remapped	Perfect	NC_000024.10:g.(?_ 9802750)_(9811938_ ?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	9,802,750	9,811,938
nssv14102241	Remapped	Perfect	NC_000024.10:g.(?_ 9802750)_(9811938_ ?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	9,802,750	9,811,938
nssv14102262	Remapped	Perfect	NC_000024.10:g.(?_ 9802750)_(9811938_ ?)dup	GRCh38.p12	First Pass	NC_000024.10	ChrY	9,802,750	9,811,938
nssv14102222	Submitted genomic		NC_000024.9:g.(?_9 640359)_(9649547_? )del	GRCh37 (hg19)		NC_000024.9	ChrY	9,640,359	9,649,547
nssv14102241	Submitted genomic		NC_000024.9:g.(?_9 640359)_(9649547_? )del	GRCh37 (hg19)		NC_000024.9	ChrY	9,640,359	9,649,547
nssv14102262	Submitted genomic		NC_000024.9:g.(?_9 640359)_(9649547_? )dup	GRCh37 (hg19)		NC_000024.9	ChrY	9,640,359	9,649,547

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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