nsv3113301
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:217,718
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1310 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 1310 SVs from 85 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3113301 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nsv3113301 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14084999 | deletion | sample210 | Oligo aCGH | Probe signal intensity | 58 |
| nssv14085233 | deletion | sample222 | Oligo aCGH | Probe signal intensity | 71 |
| nssv14085825 | deletion | sample214 | Oligo aCGH | Probe signal intensity | 60 |
| nssv14086226 | deletion | sample230 | Oligo aCGH | Probe signal intensity | 32 |
| nssv14088546 | deletion | sample262 | Oligo aCGH | Probe signal intensity | 74 |
| nssv14089660 | deletion | sample241 | Oligo aCGH | Probe signal intensity | 59 |
| nssv14091175 | deletion | sample26 | Oligo aCGH | Probe signal intensity | 48 |
| nssv14091653 | deletion | sample292 | Oligo aCGH | Probe signal intensity | 69 |
| nssv14095425 | deletion | sample327 | Oligo aCGH | Probe signal intensity | 23 |
| nssv14096909 | deletion | sample138 | Oligo aCGH | Probe signal intensity | 112 |
| nssv14097410 | deletion | sample140 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14098001 | deletion | sample364 | Oligo aCGH | Probe signal intensity | 95 |
| nssv14100109 | deletion | sample382 | Oligo aCGH | Probe signal intensity | 83 |
| nssv14100968 | deletion | sample385 | Oligo aCGH | Probe signal intensity | 65 |
| nssv14108118 | deletion | sample84 | Oligo aCGH | Probe signal intensity | 76 |
| nssv14108752 | deletion | sample9 | Oligo aCGH | Probe signal intensity | 78 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14084999 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14085233 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14085825 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14086226 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14088546 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14089660 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14091175 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14091653 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14095425 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14096909 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14097410 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14098001 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14100109 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14100968 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14108118 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14108752 | Remapped | Perfect | NC_000001.11:g.(?_ 189357013)_(189574 730_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,357,013 | 189,574,730 |
| nssv14084999 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14085233 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14085825 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14086226 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14088546 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14089660 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14091175 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14091653 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14095425 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14096909 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14097410 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14098001 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14100109 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14100968 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14108118 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 | ||
| nssv14108752 | Submitted genomic | NC_000001.10:g.(?_ 189326143)_(189543 860_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 189,326,143 | 189,543,860 |