nsv1191953
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:76,223
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 598 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 598 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 286 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1191953 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 2,137,416 | 2,213,638 |
| nsv1191953 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 2,187,417 | 2,263,639 |
| nsv1191953 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 2,127,418 | 2,203,640 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7460470 | copy number loss | 16425 | Oligo aCGH | Probe signal intensity | nssv7474238, nssv7471953 |
| nssv7463386 | copy number loss | 16401 | Oligo aCGH | Probe signal intensity | nssv7475748, nssv7466047, nssv7466828 |
| nssv7472614 | copy number loss | 17865 | Oligo aCGH | Probe signal intensity | nssv7471935, nssv7459715 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7460470 | Remapped | Perfect | NC_000016.10:g.(?_ 2137416)_(2213638_ ?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 2,137,416 | 2,213,638 |
| nssv7463386 | Remapped | Perfect | NC_000016.10:g.(?_ 2137416)_(2213638_ ?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 2,137,416 | 2,213,638 |
| nssv7472614 | Remapped | Perfect | NC_000016.10:g.(?_ 2137416)_(2213638_ ?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 2,137,416 | 2,213,638 |
| nssv7460470 | Remapped | Perfect | NC_000016.9:g.(?_2 187417)_(2263639_? )del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 2,187,417 | 2,263,639 |
| nssv7463386 | Remapped | Perfect | NC_000016.9:g.(?_2 187417)_(2263639_? )del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 2,187,417 | 2,263,639 |
| nssv7472614 | Remapped | Perfect | NC_000016.9:g.(?_2 187417)_(2263639_? )del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 2,187,417 | 2,263,639 |
| nssv7460470 | Submitted genomic | NC_000016.8:g.(?_2 127418)_(2203640_? )del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 2,127,418 | 2,203,640 | ||
| nssv7463386 | Submitted genomic | NC_000016.8:g.(?_2 127418)_(2203640_? )del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 2,127,418 | 2,203,640 | ||
| nssv7472614 | Submitted genomic | NC_000016.8:g.(?_2 127418)_(2203640_? )del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 2,127,418 | 2,203,640 |