nsv1188258
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:298,177
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2533 SVs from 103 studies. See in: genome view
Overlapping variant regions from other studies: 661 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 2851 SVs from 108 studies. See in: genome view
Overlapping variant regions from other studies: 863 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1188258 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nsv1188258 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nsv1188258 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nsv1188258 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7459492 | copy number loss | 20022 | Oligo aCGH | Probe signal intensity | nssv7465105, nssv7471198 |
| nssv7459732 | copy number loss | 29224 | Oligo aCGH | Probe signal intensity | nssv7467902 |
| nssv7460327 | copy number loss | 30448 | Oligo aCGH | Probe signal intensity | 5 |
| nssv7462794 | copy number loss | 10383 | Oligo aCGH | Probe signal intensity | nssv7474445, nssv7465146 |
| nssv7463543 | copy number loss | 16108 | Oligo aCGH | Probe signal intensity | nssv7461568 |
| nssv7463771 | copy number loss | 17172 | Oligo aCGH | Probe signal intensity | nssv7464107 |
| nssv7471019 | copy number loss | 22069 | Oligo aCGH | Probe signal intensity | nssv7474340, nssv7468047, nssv7468606 |
| nssv7471897 | copy number gain | 32231 | Oligo aCGH | Probe signal intensity | nssv7472521, nssv7462400 |
| nssv7471935 | copy number loss | 17865 | Oligo aCGH | Probe signal intensity | nssv7459715, nssv7472614 |
| nssv7472043 | copy number loss | 18766 | Oligo aCGH | Probe signal intensity | nssv7463982, nssv7469530, nssv7473521 |
| nssv7473061 | copy number loss | 15800 | Oligo aCGH | Probe signal intensity | nssv7462889 |
| nssv7474478 | copy number loss | 16301 | Oligo aCGH | Probe signal intensity | nssv7469424 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7459492 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7459732 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7460327 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7462794 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7463543 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7463771 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7471019 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7471897 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)dup | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7471935 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7472043 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7473061 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7474478 | Remapped | Pass | NT_187603.1:g.(?_1 )_(157760_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 157,760 |
| nssv7459492 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7459732 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7460327 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7462794 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7463543 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7463771 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7471019 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7471897 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7471935 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7472043 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7473061 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7474478 | Remapped | Good | NC_000015.10:g.(?_ 22759587)_(2305776 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,759,587 | 23,057,763 |
| nssv7459492 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7459732 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7460327 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7462794 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7463543 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7463771 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7471019 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7471897 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7471935 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7472043 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7473061 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7474478 | Remapped | Good | NC_000015.9:g.(?_2 2815305)_(23113524 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,815,305 | 23,113,524 |
| nssv7459492 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7459732 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7460327 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7462794 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7463543 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7463771 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7471019 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7471897 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)dup | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7471935 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7472043 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7473061 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 | ||
| nssv7474478 | Submitted genomic | NC_000015.8:g.(?_2 0366669)_(20664965 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 20,366,669 | 20,664,965 |