Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv1154048

Organism: Homo sapiens

Study:nstd107 (John et al. 2014)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):John et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 219 SVs from 39 studies. See in: genome view

Remapped(Score: Perfect):174,249,978-174,249,978

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv1154048	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	174,249,978	174,249,978	-
nsv1154048	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	122,585,624	122,585,624	-
nsv1154048	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	174,219,116	174,219,116	-
nsv1154048	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	122,456,332	122,456,332	-

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv4003325	interchromosomal translocation	KWB1	Sequencing	Read depth and paired-end mapping	8,440

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv4003325	Remapped	Perfect	GRCh38.p12	First Pass	NC_000001.11	Chr1	174,249,978	174,249,978	-
nssv4003325	Remapped	Perfect	GRCh38.p12	First Pass	NC_000011.10	Chr11	122,585,624	122,585,624	-
nssv4003325	Submitted genomic		GRCh37 (hg19)		NC_000001.10	Chr1	174,219,116	174,219,116	-
nssv4003325	Submitted genomic		GRCh37 (hg19)		NC_000011.9	Chr11	122,456,332	122,456,332	-

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI