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nstd107 (John et al. 2014)

Organism:
Human
Study Type:
Control Set
Submitter:
Prashantha Hebbar
Submitter URL:
http://www.sciencedirect.com/science/article/pii/S2213596014001299
Description:
Comprehensive analysis of a personal genome of Bedouin ancestry from Kuwait. See Variant Summary counts for nstd107 in dbVar Variant Summary.
Project:
PRJNA245931
Publication(s):
John et al. 2014

Detailed Information: Download 8440 Variant Regions, Download 8440 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr1628628RemappedNC_000001.11
NC_000002.12Chr2728728RemappedNC_000002.12
NC_000003.12Chr3463463RemappedNC_000003.12
NC_000004.12Chr4568568RemappedNC_000004.12
NC_000005.10Chr5441441RemappedNC_000005.10
NC_000006.12Chr6428428RemappedNC_000006.12
NC_000007.14Chr7634634RemappedNC_000007.14
NC_000008.11Chr8428428RemappedNC_000008.11
NC_000009.12Chr9505505RemappedNC_000009.12
NC_000010.11Chr10477477RemappedNC_000010.11
NC_000011.10Chr11375375RemappedNC_000011.10
NC_000012.12Chr12330330RemappedNC_000012.12
NC_000013.11Chr13261261RemappedNC_000013.11
NC_000014.9Chr14263263RemappedNC_000014.9
NC_000015.10Chr15316316RemappedNC_000015.10
NC_000016.10Chr16333333RemappedNC_000016.10
NC_000017.11Chr17298298RemappedNC_000017.11
NC_000018.10Chr18251251RemappedNC_000018.10
NC_000019.10Chr19308308RemappedNC_000019.10
NC_000020.11Chr20240240RemappedNC_000020.11
NC_000021.9Chr21237237RemappedNC_000021.9
NC_000022.11Chr22210210RemappedNC_000022.11
NC_000023.11ChrX412412RemappedNC_000023.11
NC_000024.10ChrY158158RemappedNC_000024.10
NT_187513.1Unplaced|NT_187513.177RemappedNT_187513.1
NT_187361.1Chr1|NT_187361.188RemappedNT_187361.1
NT_187364.1Chr1|NT_187364.111RemappedNT_187364.1
NT_187515.1Chr1|NT_187515.188RemappedNT_187515.1
NT_187516.1Chr1|NT_187516.122RemappedNT_187516.1
NT_187517.1Chr1|NT_187517.111RemappedNT_187517.1
NT_187518.1Chr1|NT_187518.111RemappedNT_187518.1
NT_187519.1Chr1|NT_187519.122RemappedNT_187519.1
NT_187520.1Chr1|NT_187520.166RemappedNT_187520.1
NT_187646.1Chr1|NT_187646.111RemappedNT_187646.1
NW_003315906.1Chr1|NW_003315906.111RemappedNW_003315906.1
NW_011332687.1Chr1|NW_011332687.122RemappedNW_011332687.1
NW_011332688.1Chr1|NW_011332688.144RemappedNW_011332688.1
NW_014040926.1Chr1|NW_014040926.122RemappedNW_014040926.1
NW_014040927.1Chr1|NW_014040927.111RemappedNW_014040927.1
NW_017852928.1Chr1|NW_017852928.144RemappedNW_017852928.1
NW_018654706.1Chr1|NW_018654706.111RemappedNW_018654706.1
NT_187522.1Chr2|NT_187522.111RemappedNT_187522.1
NT_187523.1Chr2|NT_187523.122RemappedNT_187523.1
NT_187524.1Chr2|NT_187524.111RemappedNT_187524.1
NT_187525.1Chr2|NT_187525.133RemappedNT_187525.1
NT_187526.1Chr2|NT_187526.111RemappedNT_187526.1
NT_187527.1Chr2|NT_187527.133RemappedNT_187527.1
NT_187528.1Chr2|NT_187528.144RemappedNT_187528.1
NT_187529.1Chr2|NT_187529.133RemappedNT_187529.1
NT_187647.1Chr2|NT_187647.122RemappedNT_187647.1
NT_187648.1Chr2|NT_187648.155RemappedNT_187648.1
NW_011332689.1Chr2|NW_011332689.155RemappedNW_011332689.1
NW_011332690.1Chr2|NW_011332690.111RemappedNW_011332690.1
NW_012132915.1Chr2|NW_012132915.133RemappedNW_012132915.1
NW_018654710.1Chr2|NW_018654710.111RemappedNW_018654710.1
NT_187678.1Chr3|NT_187678.188RemappedNT_187678.1
NT_187688.1Chr3|NT_187688.188RemappedNT_187688.1
NT_187689.1Chr3|NT_187689.188RemappedNT_187689.1
NT_187690.1Chr3|NT_187690.188RemappedNT_187690.1
NT_187691.1Chr3|NT_187691.188RemappedNT_187691.1
NT_187532.1Chr3|NT_187532.166RemappedNT_187532.1
NT_187537.1Chr3|NT_187537.111RemappedNT_187537.1
NT_187538.1Chr3|NT_187538.111RemappedNT_187538.1
NT_187539.1Chr3|NT_187539.144RemappedNT_187539.1
NT_187649.1Chr3|NT_187649.188RemappedNT_187649.1
NW_009646197.1Chr3|NW_009646197.111RemappedNW_009646197.1
NW_009646198.1Chr3|NW_009646198.111RemappedNW_009646198.1
NW_012132916.1Chr3|NW_012132916.111RemappedNW_012132916.1
NW_018654711.1Chr3|NW_018654711.111RemappedNW_018654711.1
NT_187679.1Chr4|NT_187679.11414RemappedNT_187679.1
NT_113793.3Chr4|NT_113793.366RemappedNT_113793.3
NT_187540.1Chr4|NT_187540.122RemappedNT_187540.1
NT_187542.1Chr4|NT_187542.111RemappedNT_187542.1
NT_187543.1Chr4|NT_187543.11010RemappedNT_187543.1
NT_187544.1Chr4|NT_187544.111RemappedNT_187544.1
NT_187545.1Chr4|NT_187545.111RemappedNT_187545.1
NT_187650.1Chr4|NT_187650.11111RemappedNT_187650.1
NT_187547.1Chr5|NT_187547.155RemappedNT_187547.1
NT_187548.1Chr5|NT_187548.122RemappedNT_187548.1
NT_187550.1Chr5|NT_187550.122RemappedNT_187550.1
NT_187551.1Chr5|NT_187551.111RemappedNT_187551.1
NT_187651.1Chr5|NT_187651.111RemappedNT_187651.1
NT_187652.1Chr5|NT_187652.122RemappedNT_187652.1
NW_003315917.2Chr5|NW_003315917.233RemappedNW_003315917.2
NW_003315918.1Chr5|NW_003315918.111RemappedNW_003315918.1
NW_003315920.1Chr5|NW_003315920.111RemappedNW_003315920.1
NW_009646199.1Chr5|NW_009646199.122RemappedNW_009646199.1
NW_016107298.1Chr5|NW_016107298.111RemappedNW_016107298.1
NW_018654712.1Chr5|NW_018654712.122RemappedNW_018654712.1
NT_187553.1Chr6|NT_187553.177RemappedNT_187553.1
NT_187556.1Chr6|NT_187556.111RemappedNT_187556.1
NT_187557.1Chr6|NT_187557.122RemappedNT_187557.1
NW_004166862.2Chr6|NW_004166862.211RemappedNW_004166862.2
NW_012132918.1Chr6|NW_012132918.111RemappedNW_012132918.1
NW_013171802.1Chr6|NW_013171802.111RemappedNW_013171802.1
NW_018654713.1Chr6|NW_018654713.111RemappedNW_018654713.1
NT_187558.1Chr7|NT_187558.144RemappedNT_187558.1
NT_187560.1Chr7|NT_187560.188RemappedNT_187560.1
NT_187562.1Chr7|NT_187562.122RemappedNT_187562.1
NT_187564.1Chr7|NT_187564.111RemappedNT_187564.1
NT_187653.1Chr7|NT_187653.166RemappedNT_187653.1
NW_012132919.1Chr7|NW_012132919.111RemappedNW_012132919.1
NW_017852929.1Chr7|NW_017852929.111RemappedNW_017852929.1
NW_017852930.1Chr7|NW_017852930.122RemappedNW_017852930.1
NW_018654714.1Chr7|NW_018654714.11111RemappedNW_018654714.1
NW_018654715.1Chr7|NW_018654715.111RemappedNW_018654715.1
NT_187680.1Chr8|NT_187680.155RemappedNT_187680.1
NT_187565.1Chr8|NT_187565.166RemappedNT_187565.1
NT_187566.1Chr8|NT_187566.111RemappedNT_187566.1
NT_187568.1Chr8|NT_187568.155RemappedNT_187568.1
NT_187569.1Chr8|NT_187569.111RemappedNT_187569.1
NT_187570.1Chr8|NT_187570.111RemappedNT_187570.1
NT_187571.1Chr8|NT_187571.111RemappedNT_187571.1
NT_187572.1Chr8|NT_187572.133RemappedNT_187572.1
NT_187573.1Chr8|NT_187573.111RemappedNT_187573.1
NT_187574.1Chr8|NT_187574.111RemappedNT_187574.1
NT_187576.1Chr8|NT_187576.11818RemappedNT_187576.1
NT_187577.1Chr8|NT_187577.144RemappedNT_187577.1
NT_187654.1Chr8|NT_187654.144RemappedNT_187654.1
NT_187655.1Chr8|NT_187655.166RemappedNT_187655.1
NW_017852931.1Chr8|NW_017852931.111RemappedNW_017852931.1
NW_018654716.1Chr8|NW_018654716.111RemappedNW_018654716.1
NW_018654717.1Chr8|NW_018654717.12626RemappedNW_018654717.1
NT_187578.1Chr9|NT_187578.111RemappedNT_187578.1
NW_003315930.1Chr9|NW_003315930.111RemappedNW_003315930.1
NW_009646201.1Chr9|NW_009646201.133RemappedNW_009646201.1
NT_187579.1Chr10|NT_187579.11919RemappedNT_187579.1
NW_003315934.1Chr10|NW_003315934.111RemappedNW_003315934.1
NW_013171807.1Chr10|NW_013171807.122RemappedNW_013171807.1
NT_187681.1Chr11|NT_187681.144RemappedNT_187681.1
NT_187656.1Chr11|NT_187656.122RemappedNT_187656.1
NT_187657.1Chr11|NT_187657.111RemappedNT_187657.1
NT_187581.1Chr11|NT_187581.133RemappedNT_187581.1
NT_187584.1Chr11|NT_187584.111RemappedNT_187584.1
NT_187585.1Chr11|NT_187585.133RemappedNT_187585.1
NT_187586.1Chr11|NT_187586.144RemappedNT_187586.1
NW_013171808.1Chr11|NW_013171808.111RemappedNW_013171808.1
NW_015148966.1Chr11|NW_015148966.155RemappedNW_015148966.1
NW_019805495.1Chr11|NW_019805495.122RemappedNW_019805495.1
NT_187658.1Chr12|NT_187658.122RemappedNT_187658.1
NT_187589.1Chr12|NT_187589.122RemappedNT_187589.1
NT_187591.1Chr12|NT_187591.111RemappedNT_187591.1
NW_003571049.1Chr12|NW_003571049.155RemappedNW_003571049.1
NW_003571050.1Chr12|NW_003571050.122RemappedNW_003571050.1
NW_011332696.1Chr12|NW_011332696.111RemappedNW_011332696.1
NW_015148967.1Chr12|NW_015148967.122RemappedNW_015148967.1
NW_018654718.1Chr12|NW_018654718.155RemappedNW_018654718.1
NW_018654719.1Chr12|NW_018654719.122RemappedNW_018654719.1
NW_019805499.1Chr12|NW_019805499.122RemappedNW_019805499.1
NT_187592.1Chr13|NT_187592.144RemappedNT_187592.1
NT_187594.1Chr13|NT_187594.122RemappedNT_187594.1
NW_011332698.1Chr13|NW_011332698.144RemappedNW_011332698.1
NW_011332699.1Chr13|NW_011332699.11616RemappedNW_011332699.1
NW_011332700.1Chr13|NW_011332700.111RemappedNW_011332700.1
NW_013171811.1Chr13|NW_013171811.111RemappedNW_013171811.1
NT_113796.3Chr14|NT_113796.311RemappedNT_113796.3
NT_187599.1Chr14|NT_187599.111RemappedNT_187599.1
NT_187600.1Chr14|NT_187600.12222RemappedNT_187600.1
NT_187601.1Chr14|NT_187601.133RemappedNT_187601.1
NW_018654721.1Chr14|NW_018654721.111RemappedNW_018654721.1
NW_018654722.1Chr14|NW_018654722.122RemappedNW_018654722.1
NT_187659.1Chr15|NT_187659.111RemappedNT_187659.1
NT_187660.1Chr15|NT_187660.11919RemappedNT_187660.1
NT_187382.1Chr15|NT_187382.111RemappedNT_187382.1
NT_187602.1Chr15|NT_187602.122RemappedNT_187602.1
NT_187603.1Chr15|NT_187603.111RemappedNT_187603.1
NT_187604.1Chr15|NT_187604.155RemappedNT_187604.1
NT_187605.1Chr15|NT_187605.111RemappedNT_187605.1
NT_187606.1Chr15|NT_187606.144RemappedNT_187606.1
NW_003315943.1Chr15|NW_003315943.199RemappedNW_003315943.1
NW_003315944.2Chr15|NW_003315944.211RemappedNW_003315944.2
NW_011332701.1Chr15|NW_011332701.12020RemappedNW_011332701.1
NT_187607.1Chr16|NT_187607.11616RemappedNT_187607.1
NW_013171813.1Chr16|NW_013171813.111RemappedNW_013171813.1
NW_017852933.1Chr16|NW_017852933.188RemappedNW_017852933.1
NT_187661.1Chr17|NT_187661.122RemappedNT_187661.1
NT_187662.1Chr17|NT_187662.177RemappedNT_187662.1
NT_187664.1Chr17|NT_187664.133RemappedNT_187664.1
NW_003871093.1Chr17|NW_003871093.111RemappedNW_003871093.1
NT_187611.1Chr17|NT_187611.122RemappedNT_187611.1
NT_187612.1Chr17|NT_187612.122RemappedNT_187612.1
NT_187613.1Chr17|NT_187613.155RemappedNT_187613.1
NT_187614.1Chr17|NT_187614.11010RemappedNT_187614.1
NT_187615.1Chr17|NT_187615.122RemappedNT_187615.1
NW_003315952.3Chr17|NW_003315952.31111RemappedNW_003315952.3
NW_003315954.1Chr17|NW_003315954.133RemappedNW_003315954.1
NW_003315955.1Chr17|NW_003315955.144RemappedNW_003315955.1
NW_003871092.1Chr17|NW_003871092.111RemappedNW_003871092.1
NW_017363817.1Chr17|NW_017363817.155RemappedNW_017363817.1
NW_017363818.1Chr17|NW_017363818.111RemappedNW_017363818.1
NW_017363819.1Chr17|NW_017363819.122RemappedNW_017363819.1
NT_187665.1Chr18|NT_187665.166RemappedNT_187665.1
NT_187666.1Chr18|NT_187666.133RemappedNT_187666.1
NT_187617.1Chr18|NT_187617.155RemappedNT_187617.1
NW_003315956.1Chr18|NW_003315956.111RemappedNW_003315956.1
NW_003315958.1Chr18|NW_003315958.155RemappedNW_003315958.1
NW_003315959.1Chr18|NW_003315959.111RemappedNW_003315959.1
NW_003315960.1Chr18|NW_003315960.111RemappedNW_003315960.1
NW_003315961.1Chr18|NW_003315961.133RemappedNW_003315961.1
NW_013171814.1Chr18|NW_013171814.111RemappedNW_013171814.1
NW_019805503.1Chr18|NW_019805503.111RemappedNW_019805503.1
NT_187693.1Chr19|NT_187693.188RemappedNT_187693.1
NW_003571061.2Chr19|NW_003571061.255RemappedNW_003571061.2
NW_003571057.2Chr19|NW_003571057.244RemappedNW_003571057.2
NW_003571058.2Chr19|NW_003571058.244RemappedNW_003571058.2
NW_003571059.2Chr19|NW_003571059.244RemappedNW_003571059.2
NW_003571060.1Chr19|NW_003571060.166RemappedNW_003571060.1
NW_003571056.2Chr19|NW_003571056.244RemappedNW_003571056.2
NW_003571055.2Chr19|NW_003571055.244RemappedNW_003571055.2
NT_187622.1Chr19|NT_187622.122RemappedNT_187622.1
NW_003315962.1Chr19|NW_003315962.122RemappedNW_003315962.1
NW_003315964.2Chr19|NW_003315964.222RemappedNW_003315964.2
NW_003315965.1Chr19|NW_003315965.111RemappedNW_003315965.1
NW_003571054.1Chr19|NW_003571054.166RemappedNW_003571054.1
NW_009646206.1Chr19|NW_009646206.122RemappedNW_009646206.1
NW_014040929.1Chr19|NW_014040929.133RemappedNW_014040929.1
NT_187623.1Chr20|NT_187623.111RemappedNT_187623.1
NT_187624.1Chr20|NT_187624.144RemappedNT_187624.1
NT_187626.1Chr21|NT_187626.122RemappedNT_187626.1
NT_187628.1Chr21|NT_187628.111RemappedNT_187628.1
NW_003315967.2Chr21|NW_003315967.211RemappedNW_003315967.2
NW_003315969.2Chr21|NW_003315969.211RemappedNW_003315969.2
NW_003315970.2Chr21|NW_003315970.211RemappedNW_003315970.2
NT_187682.1Chr22|NT_187682.111RemappedNT_187682.1
NW_004504305.1Chr22|NW_004504305.111RemappedNW_004504305.1
NW_009646207.1Chr22|NW_009646207.111RemappedNW_009646207.1
NT_187632.1Chr22|NT_187632.122RemappedNT_187632.1
NT_187633.1Chr22|NT_187633.122RemappedNT_187633.1
NW_003315971.2Chr22|NW_003315971.211RemappedNW_003315971.2
NT_187667.1ChrX|NT_187667.188RemappedNT_187667.1
NT_187634.1ChrX|NT_187634.188RemappedNT_187634.1
NT_187635.1ChrX|NT_187635.111RemappedNT_187635.1
NW_009646209.1ChrY|NW_009646209.11414RemappedNW_009646209.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.10Chr1654654SubmittedNC_000001.10
NC_000002.11Chr2733733SubmittedNC_000002.11
NC_000003.11Chr3462462SubmittedNC_000003.11
NC_000004.11Chr4570570SubmittedNC_000004.11
NC_000005.9Chr5441441SubmittedNC_000005.9
NC_000006.11Chr6429429SubmittedNC_000006.11
NC_000007.13Chr7635635SubmittedNC_000007.13
NC_000008.10Chr8439439SubmittedNC_000008.10
NC_000009.11Chr9507507SubmittedNC_000009.11
NC_000010.10Chr10478478SubmittedNC_000010.10
NC_000011.9Chr11376376SubmittedNC_000011.9
NC_000012.11Chr12330330SubmittedNC_000012.11
NC_000013.10Chr13261261SubmittedNC_000013.10
NC_000014.8Chr14266266SubmittedNC_000014.8
NC_000015.9Chr15319319SubmittedNC_000015.9
NC_000016.9Chr16335335SubmittedNC_000016.9
NC_000017.10Chr17299299SubmittedNC_000017.10
NC_000018.9Chr18252252SubmittedNC_000018.9
NC_000019.9Chr19310310SubmittedNC_000019.9
NC_000020.10Chr20240240SubmittedNC_000020.10
NC_000021.8Chr21237237SubmittedNC_000021.8
NC_000022.10Chr22212212SubmittedNC_000022.10
NC_000023.10ChrX418418SubmittedNC_000023.10
NC_000024.9ChrY159159SubmittedNC_000024.9

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.10Chr16543964715441065439647154410
NC_000002.11Chr2733522862404733522862404
NC_000003.11Chr3462314400302462314400302
NC_000004.11Chr4570397302391570397302391
NC_000005.9Chr5441309200288441309200288
NC_000006.11Chr6429300560265429300560265
NC_000007.13Chr763544412303726354441230372
NC_000008.10Chr8439283012267439283012267
NC_000009.11Chr95073862710019250738627100192
NC_000010.10Chr10478319921389478319921389
NC_000011.9Chr11376261101258376261101258
NC_000012.11Chr12330217300250330217300250
NC_000013.10Chr13261192000163261192000163
NC_000014.8Chr14266155642216266155642216
NC_000015.9Chr15319209610192319209610192
NC_000016.9Chr16335176321339335176321339
NC_000017.10Chr17299179430221299179430221
NC_000018.9Chr18252180101150252180101150
NC_000019.9Chr19310202300256310202300256
NC_000020.10Chr20240165310155240165310155
NC_000021.8Chr21237151400179237151400179
NC_000022.10Chr2221214810331082121481033108
NC_000023.10ChrX41831828561214183182856121
NC_000024.9ChrY1591201008115912010081

Samplesets

Number of Samplesets: 1

Name:
KWB1
Size:
1 (sample data not available)
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
Sex:
Male

Experimental Details

Experiment IDTypeMethodAnalysisPlatformsNumber of Variant Calls
1DiscoverySequencingRead depth and paired-end mappingIllumina HiSeq 20008,440

Validations

No validation data were submitted for this study.

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