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dbVar

Database of genomic structural variation

nsv1153918

Organism: Homo sapiens

Study:nstd107 (John et al. 2014)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):John et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 167 SVs from 25 studies. See in: genome view

Remapped(Score: Perfect):117,973,456-117,973,456

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv1153918	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	117,973,456	117,973,456	not reported
nsv1153918	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	117,973,595	117,973,595	not reported
nsv1153918	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	117,309,151	117,309,151	not reported
nsv1153918	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	117,309,290	117,309,290	not reported

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv4003195	intrachromosomal translocation	KWB1	Sequencing	Read depth and paired-end mapping	8,440

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv4003195	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	117,973,456	117,973,456	not reported
nssv4003195	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	117,973,595	117,973,595	not reported
nssv4003195	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	117,309,151	117,309,151	not reported
nssv4003195	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	117,309,290	117,309,290	not reported

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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