nsv1153621
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 654 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 651 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 174 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 172 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 654 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 651 SVs from 37 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv1153621 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 2,522,697 | 2,522,697 | not reported |
| nsv1153621 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 2,523,013 | 2,523,013 | not reported |
| nsv1153621 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187515.1 | Chr1|NT_18 7515.1 | 73,887 | 73,887 | not reported |
| nsv1153621 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187515.1 | Chr1|NT_18 7515.1 | 74,203 | 74,203 | not reported |
| nsv1153621 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 2,454,136 | 2,454,136 | not reported | ||
| nsv1153621 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 2,454,452 | 2,454,452 | not reported |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv4002279 | intrachromosomal translocation | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv4002279 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187515.1 | Chr1|NT_18 7515.1 | 73,887 | 73,887 | not reported |
| nssv4002279 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187515.1 | Chr1|NT_18 7515.1 | 74,203 | 74,203 | not reported |
| nssv4002279 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 2,522,697 | 2,522,697 | not reported |
| nssv4002279 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 2,523,013 | 2,523,013 | not reported |
| nssv4002279 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 2,454,136 | 2,454,136 | not reported | ||
| nssv4002279 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 2,454,452 | 2,454,452 | not reported |