esv7031
- Organism: Homo sapiens
- Study:estd19 (Ahn et al. 2009)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:22,114
- Publication(s):Ahn et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 336 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 336 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 136 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv7031 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 1,893,837 | 1,894,048 | 1,915,719 | 1,915,950 |
| esv7031 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 1,915,067 | 1,915,278 | 1,936,949 | 1,937,180 |
| esv7031 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 1,871,643 | 1,871,854 | 1,893,525 | 1,893,756 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv29472 | copy number loss | Sequencing | Read depth and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv29472 | Remapped | Perfect | NC_000011.10:g.(18 93837_1894048)_(19 15719_1915950)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 1,893,837 | 1,894,048 | 1,915,719 | 1,915,950 |
| essv29472 | Remapped | Perfect | NC_000011.9:g.(191 5067_1915278)_(193 6949_1937180)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 1,915,067 | 1,915,278 | 1,936,949 | 1,937,180 |
| essv29472 | Submitted genomic | NC_000011.8:g.(187 1643_1871854)_(189 3525_1893756)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 1,871,643 | 1,871,854 | 1,893,525 | 1,893,756 |