estd19 (Ahn et al. 2009)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Jong Bhak
- Description:
- We sequenced the genome of one Korean individual to 28.95-fold redundancy using Illumina paired-end sequencing. We identified 4298 structural variants. See Variant Summary counts for estd19 in dbVar Variant Summary.
- Publication(s):
- Ahn et al. 2009
Detailed Information: Download 4298 Variant Regions, Download 4298 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 308 | 308 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 318 | 318 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 199 | 199 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 301 | 301 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 224 | 224 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 300 | 300 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 252 | 252 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 211 | 211 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 149 | 149 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 323 | 323 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 193 | 193 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 174 | 174 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 101 | 101 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 100 | 100 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 98 | 98 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 171 | 171 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 89 | 89 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 163 | 163 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 142 | 142 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 61 | 61 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 98 | 98 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 55 | 55 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 45 | 45 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 185 | 185 | Remapped | NC_000024.10 |
| NT_187513.1 | Unplaced|NT_187513.1 | 1 | 1 | Remapped | NT_187513.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 1 | 1 | Remapped | NT_187515.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 1 | 1 | Remapped | NT_187519.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 1 | Remapped | NT_187521.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 1 | Remapped | NW_009646195.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 1 | Remapped | NW_011332687.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 1 | 1 | Remapped | NW_014040926.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 1 | 1 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 1 | 1 | Remapped | NW_018654707.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 2 | 2 | Remapped | NT_187525.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 3 | 3 | Remapped | NT_187529.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 1 | 1 | Remapped | NT_187648.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 1 | 1 | Remapped | NW_011332689.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 1 | 1 | Remapped | NW_012132915.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 1 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 3 | 3 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 2 | 2 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 3 | 3 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 3 | 3 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 3 | 3 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 3 | 3 | Remapped | NT_187532.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 1 | 1 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 2 | 2 | Remapped | NT_187649.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 1 | 1 | Remapped | NW_019805488.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 13 | 13 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 8 | 8 | Remapped | NT_113793.3 |
| NT_167250.2 | Chr4|NT_167250.2 | 2 | 2 | Remapped | NT_167250.2 |
| NT_187543.1 | Chr4|NT_187543.1 | 4 | 4 | Remapped | NT_187543.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 1 | 1 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 4 | 4 | Remapped | NT_187650.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 1 | 1 | Remapped | NW_013171799.1 |
| NW_015495300.1 | Chr4|NW_015495300.1 | 10 | 10 | Remapped | NW_015495300.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 1 | 1 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 5 | 5 | Remapped | NT_187548.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 1 | 1 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 1 | 1 | Remapped | NW_016107297.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 20 | 20 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 5 | 5 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 11 | 11 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 5 | 5 | Remapped | NT_167245.2 |
| NT_167244.2 | Chr6|NT_167244.2 | 4 | 4 | Remapped | NT_167244.2 |
| NT_187552.1 | Chr6|NT_187552.1 | 1 | 1 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 1 | 1 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 1 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 1 | 1 | Remapped | NT_187556.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 1 | 1 | Remapped | NW_012132918.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 1 | 1 | Remapped | NT_187558.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 6 | 6 | Remapped | NT_187560.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 10 | 10 | Remapped | NT_187562.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 1 | 1 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 1 | 1 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 1 | 1 | Remapped | NW_018654715.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 1 | 1 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 3 | 3 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 2 | 2 | Remapped | NT_187566.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 2 | 2 | Remapped | NT_187571.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 1 | 1 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 4 | 4 | Remapped | NT_187576.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 1 | 1 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 1 | 1 | Remapped | NT_187655.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 6 | 6 | Remapped | NW_018654717.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 1 | 1 | Remapped | NW_009646201.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 3 | 3 | Remapped | NT_187579.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 2 | 2 | Remapped | NW_013171806.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 1 | 1 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 1 | 1 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 2 | 2 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 2 | 2 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 1 | 1 | Remapped | NT_187582.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 2 | 2 | Remapped | NT_187584.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 2 | 2 | Remapped | NW_003871074.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 1 | 1 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 1 | Remapped | NW_019805495.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 1 | 1 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 7 | 7 | Remapped | NT_187658.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 6 | 6 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 1 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 1 | 1 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 1 | 1 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 1 | 1 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 1 | 1 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 1 | 1 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 1 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 1 | 1 | Remapped | NT_187592.1 |
| NW_009646205.1 | Chr13|NW_009646205.1 | 1 | 1 | Remapped | NW_009646205.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 1 | 1 | Remapped | NW_011332698.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 1 | 1 | Remapped | NW_013171811.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 1 | 1 | Remapped | NT_113796.3 |
| NT_187599.1 | Chr14|NT_187599.1 | 1 | 1 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 4 | 4 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 1 | 1 | Remapped | NT_187601.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 2 | 2 | Remapped | NW_018654722.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 3 | 3 | Remapped | NT_187660.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 1 | 1 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 1 | 1 | Remapped | NT_187603.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 1 | 1 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 1 | 1 | Remapped | NT_187606.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 3 | 3 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 1 | 1 | Remapped | NT_187607.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 1 | 1 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 1 | 1 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 1 | 1 | Remapped | NT_187663.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 1 | 1 | Remapped | NT_167251.2 |
| NT_187612.1 | Chr17|NT_187612.1 | 1 | 1 | Remapped | NT_187612.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 1 | 1 | Remapped | NT_187614.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 1 | 1 | Remapped | NW_003315952.3 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 1 | 1 | Remapped | NW_017363817.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 1 | 1 | Remapped | NT_187665.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 2 | 2 | Remapped | NT_187617.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 1 | 1 | Remapped | NW_003315958.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 7 | 7 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 3 | 3 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 1 | 1 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 1 | 1 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 1 | 1 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 4 | 4 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 1 | 1 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 2 | 2 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 1 | 1 | Remapped | NT_187619.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 3 | 3 | Remapped | NW_003315964.2 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 4 | 4 | Remapped | NW_003571054.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 1 | 1 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 3 | 3 | Remapped | NT_187623.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 1 | Remapped | NW_003315968.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 1 | Remapped | NT_187682.1 |
| NT_187387.1 | Chr22|NT_187387.1 | 1 | 1 | Remapped | NT_187387.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 2 | 2 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 2 | 2 | Remapped | NT_187630.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 2 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 1 | Remapped | NW_003315972.2 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 1 | 1 | Remapped | NW_017363820.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 11 | 11 | Remapped | NW_009646209.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 317 | 317 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 318 | 318 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 199 | 199 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 301 | 301 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 224 | 224 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 301 | 301 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 252 | 252 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 211 | 211 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 150 | 150 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 324 | 324 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 194 | 194 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 174 | 174 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 102 | 102 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 101 | 101 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 98 | 98 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 181 | 181 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 88 | 88 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 163 | 163 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 142 | 142 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 62 | 62 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 98 | 98 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 56 | 56 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 45 | 45 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 185 | 185 | Remapped | NC_000024.9 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 7 | 7 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 1 | 1 | Remapped | NW_003871056.3 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 1 | 1 | Remapped | NW_003571032.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 1 | 1 | Remapped | NW_004504299.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 2 | 2 | Remapped | NT_167250.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 1 | 1 | Remapped | NW_004775427.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 1 | 1 | Remapped | NW_004775428.1 |
| NT_167244.1 | Chr6|NT_167244.1 | 3 | 3 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 4 | 4 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 24 | 24 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 5 | 5 | Remapped | NT_167247.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 1 | 1 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 11 | 11 | Remapped | NT_167249.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 3 | 3 | Remapped | NW_004070866.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 3 | 3 | Remapped | NW_003571038.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 11 | 11 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 1 | 1 | Remapped | NW_003571041.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 2 | 2 | Remapped | NW_003571042.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 1 | 1 | Remapped | NW_003315925.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 3 | 3 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 1 | 1 | Remapped | NW_003871071.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 1 | 1 | Remapped | NW_004775432.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 1 | 1 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 1 | 1 | Remapped | NW_003571046.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 2 | 2 | Remapped | NW_003871074.1 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 1 | 1 | Remapped | NW_003871075.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 1 | Remapped | NW_003871079.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 2 | 2 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 3 | 3 | Remapped | NW_003315937.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 1 | 1 | Remapped | NW_003871083.2 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 6 | 6 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 2 | 2 | Remapped | NW_003871084.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 2 | 2 | Remapped | NW_003315945.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 1 | 1 | Remapped | NT_167251.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 1 | 1 | Remapped | NW_003315950.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 2 | 2 | Remapped | NW_003871087.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 1 | 1 | Remapped | NW_004070872.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 2 | 2 | Remapped | NW_004775433.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 1 | 1 | Remapped | NW_003315958.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 3 | 3 | Remapped | NW_003315964.2 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 2 | 2 | Remapped | NW_003571053.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 1 | Remapped | NW_003571060.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 3 | 3 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 1 | 1 | Remapped | NW_004775434.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 1 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 3 | 3 | Remapped | NW_004775435.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 1 | 1 | Remapped | NW_003315972.1 |
| NW_004070873.1 | Chr22|NW_004070873.1 | 2 | 2 | Remapped | NW_004070873.1 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 1 | 1 | Remapped | NW_003871098.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 1 | 1 | Remapped | NW_003871103.3 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 1 | 1 | Remapped | NW_004070880.2 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 1 | 1 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 1 | 1 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 1 | 1 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 3 | 3 | Remapped | NW_004070890.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 318 | 318 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 318 | 318 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 199 | 199 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 302 | 302 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 224 | 224 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 301 | 301 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 255 | 255 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 212 | 212 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 150 | 150 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 325 | 325 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 194 | 194 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 174 | 174 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 102 | 102 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 101 | 101 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 98 | 98 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 181 | 181 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 90 | 90 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 163 | 163 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 145 | 145 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 62 | 62 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 98 | 98 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 56 | 56 | Submitted | NC_000022.9 |
| NC_000023.9 | ChrX | 45 | 45 | Submitted | NC_000023.9 |
| NC_000024.8 | ChrY | 185 | 185 | Submitted | NC_000024.8 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 318 | 313 | 0 | 0 | 0 | 5 | 318 | 313 | 0 | 0 | 0 | 5 |
| NC_000002.10 | Chr2 | 318 | 315 | 0 | 0 | 0 | 3 | 318 | 315 | 0 | 0 | 0 | 3 |
| NC_000003.10 | Chr3 | 199 | 198 | 0 | 1 | 0 | 0 | 199 | 198 | 0 | 1 | 0 | 0 |
| NC_000004.10 | Chr4 | 302 | 296 | 0 | 2 | 1 | 3 | 302 | 296 | 0 | 2 | 1 | 3 |
| NC_000005.8 | Chr5 | 224 | 220 | 0 | 3 | 0 | 1 | 224 | 220 | 0 | 3 | 0 | 1 |
| NC_000006.10 | Chr6 | 301 | 269 | 0 | 0 | 0 | 32 | 301 | 269 | 0 | 0 | 0 | 32 |
| NC_000007.12 | Chr7 | 255 | 237 | 3 | 0 | 1 | 14 | 255 | 237 | 3 | 0 | 1 | 14 |
| NC_000008.9 | Chr8 | 212 | 211 | 0 | 0 | 0 | 1 | 212 | 211 | 0 | 0 | 0 | 1 |
| NC_000009.10 | Chr9 | 150 | 148 | 0 | 1 | 0 | 1 | 150 | 148 | 0 | 1 | 0 | 1 |
| NC_000010.9 | Chr10 | 325 | 319 | 0 | 0 | 1 | 5 | 325 | 319 | 0 | 0 | 1 | 5 |
| NC_000011.8 | Chr11 | 194 | 186 | 0 | 0 | 0 | 8 | 194 | 186 | 0 | 0 | 0 | 8 |
| NC_000012.10 | Chr12 | 174 | 169 | 0 | 0 | 0 | 5 | 174 | 169 | 0 | 0 | 0 | 5 |
| NC_000013.9 | Chr13 | 102 | 102 | 0 | 0 | 0 | 0 | 102 | 102 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 101 | 93 | 0 | 0 | 0 | 8 | 101 | 93 | 0 | 0 | 0 | 8 |
| NC_000015.8 | Chr15 | 98 | 96 | 0 | 0 | 0 | 2 | 98 | 96 | 0 | 0 | 0 | 2 |
| NC_000016.8 | Chr16 | 181 | 179 | 0 | 0 | 0 | 2 | 181 | 179 | 0 | 0 | 0 | 2 |
| NC_000017.9 | Chr17 | 90 | 82 | 0 | 0 | 1 | 7 | 90 | 82 | 0 | 0 | 1 | 7 |
| NC_000018.8 | Chr18 | 163 | 162 | 0 | 0 | 0 | 1 | 163 | 162 | 0 | 0 | 0 | 1 |
| NC_000019.8 | Chr19 | 145 | 136 | 2 | 0 | 0 | 7 | 145 | 136 | 2 | 0 | 0 | 7 |
| NC_000020.9 | Chr20 | 62 | 62 | 0 | 0 | 0 | 0 | 62 | 62 | 0 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 98 | 94 | 0 | 0 | 0 | 4 | 98 | 94 | 0 | 0 | 0 | 4 |
| NC_000022.9 | Chr22 | 56 | 55 | 0 | 0 | 0 | 1 | 56 | 55 | 0 | 0 | 0 | 1 |
| NC_000023.9 | ChrX | 45 | 36 | 0 | 0 | 0 | 9 | 45 | 36 | 0 | 0 | 0 | 9 |
| NC_000024.8 | ChrY | 185 | 185 | 0 | 0 | 0 | 0 | 185 | 185 | 0 | 0 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 318 | 302 | 7 | 0 | 1 | 8 | 318 | 302 | 7 | 0 | 1 | 8 |
| NC_000002.10 | Chr2 | 318 | 305 | 4 | 0 | 0 | 9 | 318 | 305 | 4 | 0 | 0 | 9 |
| NC_000003.10 | Chr3 | 199 | 194 | 0 | 0 | 0 | 5 | 199 | 194 | 0 | 0 | 0 | 5 |
| NC_000004.10 | Chr4 | 302 | 279 | 0 | 3 | 1 | 19 | 302 | 279 | 0 | 3 | 1 | 19 |
| NC_000005.8 | Chr5 | 224 | 214 | 0 | 3 | 0 | 7 | 224 | 214 | 0 | 3 | 0 | 7 |
| NC_000006.10 | Chr6 | 301 | 268 | 1 | 0 | 1 | 31 | 301 | 268 | 1 | 0 | 1 | 31 |
| NC_000007.12 | Chr7 | 255 | 229 | 3 | 2 | 2 | 19 | 255 | 229 | 3 | 2 | 2 | 19 |
| NC_000008.9 | Chr8 | 212 | 192 | 1 | 0 | 0 | 19 | 212 | 192 | 1 | 0 | 0 | 19 |
| NC_000009.10 | Chr9 | 150 | 148 | 0 | 0 | 1 | 1 | 150 | 148 | 0 | 0 | 1 | 1 |
| NC_000010.9 | Chr10 | 325 | 317 | 1 | 0 | 2 | 5 | 325 | 317 | 1 | 0 | 2 | 5 |
| NC_000011.8 | Chr11 | 194 | 181 | 0 | 2 | 1 | 10 | 194 | 181 | 0 | 2 | 1 | 10 |
| NC_000012.10 | Chr12 | 174 | 159 | 0 | 0 | 0 | 15 | 174 | 159 | 0 | 0 | 0 | 15 |
| NC_000013.9 | Chr13 | 102 | 99 | 0 | 0 | 0 | 3 | 102 | 99 | 0 | 0 | 0 | 3 |
| NC_000014.7 | Chr14 | 101 | 85 | 6 | 1 | 1 | 8 | 101 | 85 | 6 | 1 | 1 | 8 |
| NC_000015.8 | Chr15 | 98 | 91 | 0 | 0 | 0 | 7 | 98 | 91 | 0 | 0 | 0 | 7 |
| NC_000016.8 | Chr16 | 181 | 132 | 7 | 31 | 10 | 1 | 181 | 132 | 7 | 31 | 10 | 1 |
| NC_000017.9 | Chr17 | 90 | 82 | 0 | 1 | 1 | 6 | 90 | 82 | 0 | 1 | 1 | 6 |
| NC_000018.8 | Chr18 | 163 | 160 | 0 | 0 | 0 | 3 | 163 | 160 | 0 | 0 | 0 | 3 |
| NC_000019.8 | Chr19 | 145 | 128 | 7 | 0 | 0 | 10 | 145 | 128 | 7 | 0 | 0 | 10 |
| NC_000020.9 | Chr20 | 62 | 57 | 1 | 0 | 1 | 3 | 62 | 57 | 1 | 0 | 1 | 3 |
| NC_000021.7 | Chr21 | 98 | 94 | 2 | 0 | 0 | 2 | 98 | 94 | 2 | 0 | 0 | 2 |
| NC_000022.9 | Chr22 | 56 | 42 | 6 | 1 | 0 | 7 | 56 | 42 | 6 | 1 | 0 | 7 |
| NC_000023.9 | ChrX | 45 | 41 | 3 | 0 | 0 | 1 | 45 | 41 | 3 | 0 | 0 | 1 |
| NC_000024.8 | ChrY | 185 | 164 | 0 | 0 | 0 | 21 | 185 | 164 | 0 | 0 | 0 | 21 |
Samplesets
Number of Samplesets: 1
- Description:
- Single Korean sample
- Size:
- 1
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SJK | Whole blood | SJK | Male | KOREAN | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Read depth and paired-end mapping | Illumina Genome Analyzer | SRA | 4,298 |