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dbVar

Database of genomic structural variation

esv2761333

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:76,774

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 723 SVs from 78 studies. See in: genome view

Remapped(Score: Perfect):111,022,794-111,099,567

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2761333	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	111,022,794	111,099,567
esv2761333	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000013.10	Chr13	111,675,141	111,751,914
esv2761333	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000013.9	Chr13	110,473,142	110,549,915

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6998253	copy number gain	SW_0032	SNP array	SNP genotyping analysis	58
essv6998254	copy number gain	SW_1257	SNP array	SNP genotyping analysis	18
essv6998256	copy number loss	SW_0835	SNP array	SNP genotyping analysis	53

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6998253	Remapped	Perfect	NC_000013.11:g.(?_ 111022794)_(111099 567_?)dup	GRCh38.p12	First Pass	NC_000013.11	Chr13	111,022,794	111,099,567
essv6998254	Remapped	Perfect	NC_000013.11:g.(?_ 111027571)_(111099 567_?)dup	GRCh38.p12	First Pass	NC_000013.11	Chr13	111,027,571	111,099,567
essv6998256	Remapped	Perfect	NC_000013.11:g.(?_ 111029653)_(111047 832_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	111,029,653	111,047,832
essv6998253	Remapped	Perfect	NC_000013.10:g.(?_ 111675141)_(111751 914_?)dup	GRCh37.p13	First Pass	NC_000013.10	Chr13	111,675,141	111,751,914
essv6998254	Remapped	Perfect	NC_000013.10:g.(?_ 111679918)_(111751 914_?)dup	GRCh37.p13	First Pass	NC_000013.10	Chr13	111,679,918	111,751,914
essv6998256	Remapped	Perfect	NC_000013.10:g.(?_ 111682000)_(111700 179_?)del	GRCh37.p13	First Pass	NC_000013.10	Chr13	111,682,000	111,700,179
essv6998253	Submitted genomic		NC_000013.9:g.(?_1 10473142)_(1105499 15_?)dup	NCBI36 (hg18)		NC_000013.9	Chr13	110,473,142	110,549,915
essv6998254	Submitted genomic		NC_000013.9:g.(?_1 10477919)_(1105499 15_?)dup	NCBI36 (hg18)		NC_000013.9	Chr13	110,477,919	110,549,915
essv6998256	Submitted genomic		NC_000013.9:g.(?_1 10480001)_(1104981 80_?)del	NCBI36 (hg18)		NC_000013.9	Chr13	110,480,001	110,498,180

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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