estd203 (Vogler et al. 2010)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Christian Vogler
- Description:
- In this study a cross-population microarray-based map of copy-number variant regions (CNVRs) was generated. We used the Affymetrix Genome-Wide Human SNP Array 6.0 to scan the genomes of 1167 individuals from two ethnically distinct populations (Europe, N = 717; Rwanda, N = 450). Three different CNV-finding algorithms were tested and compared for sensitivity, specificity, and feasibility. Two algorithms were subsequently used to construct CNVR maps, which were also validated by processing subsamples with additional microarray platforms (Illumina 1M-Duo BeadChip, Nimblegen 385K aCGH array) and by comparing our data with publicly available information. See Variant Summary counts for estd203 in dbVar Variant Summary.
- Publication(s):
- Vogler et al. 2010
Detailed Information: Download 4192 Variant Regions, Download 42669 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 313 | 4,620 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 367 | 2,891 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 266 | 2,906 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 337 | 3,660 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 261 | 2,246 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 249 | 2,133 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 284 | 1,790 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 255 | 2,918 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 215 | 1,410 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 223 | 1,516 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 209 | 2,140 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 189 | 2,042 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 125 | 1,033 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 112 | 1,283 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 122 | 2,116 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 137 | 1,381 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 99 | 1,773 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 110 | 834 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 93 | 1,182 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 85 | 684 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 73 | 334 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 52 | 608 | Remapped | NC_000022.11 |
| NT_187364.1 | Chr1|NT_187364.1 | 0 | 1 | Remapped | NT_187364.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 1 | 19 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 0 | 4 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 1 | 3 | Remapped | NT_187519.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 0 | 4 | Remapped | NT_187646.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 16 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 3 | 3 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 1 | 35 | Remapped | NW_012132914.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 1 | 1 | Remapped | NW_014040927.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 3 | 10 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 2 | 517 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 1 | 1 | Remapped | NW_018654708.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 2 | 67 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 0 | 2 | Remapped | NT_187524.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 2 | 6 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 1 | 1 | Remapped | NT_187530.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 2 | 67 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 0 | 2 | Remapped | NT_187648.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 1 | 10 | Remapped | NW_012132915.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 5 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 1 | 241 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 1 | 241 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 1 | 241 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 1 | 241 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 1 | 241 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 1 | 241 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 1 | 1 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 1 | 2 | Remapped | NT_187534.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 1 | 1 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 5 | Remapped | NT_187537.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 1 | 21 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 1 | 241 | Remapped | NT_187649.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 0 | 1 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 3 | 31 | Remapped | NW_019805488.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 2 | 8 | Remapped | NT_187679.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 2 | 27 | Remapped | NT_167250.2 |
| NT_187540.1 | Chr4|NT_187540.1 | 1 | 3 | Remapped | NT_187540.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 2 | 2 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 1 | 2 | Remapped | NT_187543.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 1 | 3 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 1 | 2 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 4 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 312 | Remapped | NW_003315915.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 1 | 6 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 1 | 2 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 3 | 28 | Remapped | NT_187546.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 1 | 1 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 2 | 27 | Remapped | NT_187652.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 2 | 16 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 2 | Remapped | NW_003571036.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 6 | 101 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 3 | 5 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 8 | 59 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 2 | 4 | Remapped | NT_167245.2 |
| NT_167244.2 | Chr6|NT_167244.2 | 1 | 1 | Remapped | NT_167244.2 |
| NT_187556.1 | Chr6|NT_187556.1 | 1 | 2 | Remapped | NT_187556.1 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 1 | 4 | Remapped | NW_009646200.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 2 | 5 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 2 | 34 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 1 | 1 | Remapped | NT_187559.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 0 | 3 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 9 | 649 | Remapped | NT_187562.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 1 | 1 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 2 | 34 | Remapped | NT_187653.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 2 | 4 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 1 | 23 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 4 | Remapped | NW_019805493.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 1 | 6 | Remapped | NT_187567.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 0 | 27 | Remapped | NT_187570.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 1 | 1 | Remapped | NT_187572.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 1 | 1 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 6 | 57 | Remapped | NT_187576.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 1 | 1 | Remapped | NT_187654.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 1 | 1 | Remapped | NW_017852932.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 14 | 315 | Remapped | NW_018654717.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 1 | 1 | Remapped | NW_003315928.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 1 | 14 | Remapped | NW_003315929.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 1 | 1 | Remapped | NW_003315931.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 1 | 4 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 5 | Remapped | NW_003315934.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 3 | 77 | Remapped | NW_013171806.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 1 | 1 | Remapped | NT_187681.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 1 | 1 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 1 | 1 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 2 | 7 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 1 | 1 | Remapped | NT_187584.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 1 | 1 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 2 | Remapped | NW_003315936.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 2 | 7 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 1 | 1 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 60 | Remapped | NW_019805495.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 3 | 277 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 2 | 53 | Remapped | NT_187587.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 1 | 1 | Remapped | NW_003315942.2 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 1 | 1 | Remapped | NW_003571050.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 2 | 24 | Remapped | NW_011332696.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 2 | 69 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 1 | 1 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 3 | 14 | Remapped | NW_019805499.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 1 | 8 | Remapped | NT_187594.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 1 | 5 | Remapped | NW_011332699.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 1 | 1 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 5 | 284 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 1 | 5 | Remapped | NT_187601.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 2 | 31 | Remapped | NW_018654722.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 6 | 51 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 0 | 4 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 0 | 6 | Remapped | NT_187602.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 0 | 1 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 2 | 2 | Remapped | NT_187605.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 1 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 7 | 90 | Remapped | NW_011332701.1 |
| NT_187383.1 | Chr16|NT_187383.1 | 0 | 7 | Remapped | NT_187383.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 5 | 52 | Remapped | NT_187607.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 1 | 0 | Remapped | NW_003315945.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 1 | 3 | Remapped | NW_012132921.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 2 | 5 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 2 | 250 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 1 | 1 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 0 | 36 | Remapped | NT_187663.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 2 | 187 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 0 | 9 | Remapped | NT_167251.2 |
| NT_187384.1 | Chr17|NT_187384.1 | 0 | 2 | Remapped | NT_187384.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 1 | 1 | Remapped | NT_187612.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 4 | 216 | Remapped | NT_187614.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 2 | 2 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 3 | 62 | Remapped | NW_003315953.2 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 123 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 2 | 9 | Remapped | NT_187665.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 6 | Remapped | NW_003315956.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 2 | 9 | Remapped | NW_003315958.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 1 | 3 | Remapped | NW_014040928.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 2 | 4 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 8 | 213 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 5 | 8 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 2 | 2 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 2 | 2 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 2 | 2 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 6 | 106 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 2 | 2 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 3 | 4 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 1 | 11 | Remapped | NT_187620.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 3 | 5 | Remapped | NW_003315962.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 4 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 21 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 6 | 109 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 2 | 2 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 1 | 1 | Remapped | NW_014040929.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 2 | 3 | Remapped | NT_187627.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 2 | 52 | Remapped | NW_003315968.2 |
| NT_187629.1 | Chr22|NT_187629.1 | 1 | 6 | Remapped | NT_187629.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 220 | Remapped | NT_187633.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 315 | 4,651 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 365 | 2,851 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 266 | 2,906 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 336 | 3,659 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 261 | 2,246 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 250 | 2,139 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 286 | 2,021 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 256 | 2,943 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 220 | 1,479 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 225 | 1,609 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 209 | 2,140 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 189 | 2,042 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 125 | 1,033 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 112 | 1,447 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 122 | 2,107 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 136 | 1,358 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 97 | 1,770 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 110 | 834 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 91 | 1,180 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 84 | 680 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 73 | 334 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 53 | 795 | Remapped | NC_000022.10 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 7 | 226 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 3 | 11 | Remapped | NW_003871056.3 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 1 | 1 | Remapped | NW_004504299.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 3 | 4 | Remapped | NW_003871058.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 2 | 27 | Remapped | NT_167250.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 4 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 312 | Remapped | NW_003315915.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 1 | 1 | Remapped | NW_003571034.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 25 | 60 | Remapped | NW_004775427.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 2 | 16 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 2 | Remapped | NW_003571036.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 3 | 65 | Remapped | NW_004775428.1 |
| NT_167244.1 | Chr6|NT_167244.1 | 1 | 1 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 4 | 21 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 9 | 115 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 3 | 5 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 8 | 60 | Remapped | NT_167249.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 2 | 33 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 1 | 1 | Remapped | NW_004504300.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 1 | 19 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 9 | 649 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 4 | 12 | Remapped | NW_003871064.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 0 | 1 | Remapped | NW_004775430.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 6 | 56 | Remapped | NW_003571042.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 1 | 1 | Remapped | NW_003315928.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 1 | 14 | Remapped | NW_003315929.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 1 | 1 | Remapped | NW_003315931.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 2 | 4 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 1 | 1 | Remapped | NW_004070869.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 5 | Remapped | NW_003315934.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 1 | 3 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 3 | 222 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 1 | 3 | Remapped | NW_003871071.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 2 | Remapped | NW_003315936.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 1 | 1 | Remapped | NW_003571045.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 1 | 1 | Remapped | NW_003871072.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 1 | 1 | Remapped | NW_003315942.2 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 3 | 286 | Remapped | NW_004166863.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 1 | 1 | Remapped | NW_003315944.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 0 | 2 | Remapped | NW_003315945.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 1 | 53 | Remapped | NT_167251.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 1 | 191 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 1 | 6 | Remapped | NW_003315950.2 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 2 | 61 | Remapped | NW_003315953.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 0 | 37 | Remapped | NW_003871086.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 1 | 1 | Remapped | NW_003871088.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 2 | 180 | Remapped | NW_003871093.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 2 | 2 | Remapped | NW_004070872.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 0 | 1 | Remapped | NW_004775433.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 6 | Remapped | NW_003315956.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 2 | 9 | Remapped | NW_003315958.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 3 | 5 | Remapped | NW_003315962.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 4 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 21 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 2 | 176 | Remapped | NW_003571053.2 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 4 | 106 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 2 | 12 | Remapped | NW_004775434.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 2 | 52 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 1 | 2 | Remapped | NW_004775435.1 |
| NW_004070874.1 | Chr22|NW_004070874.1 | 0 | 4 | Remapped | NW_004070874.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 315 | 4,651 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 365 | 2,851 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 266 | 2,906 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 337 | 3,660 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 261 | 2,246 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 250 | 2,139 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 290 | 2,338 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 256 | 2,943 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 220 | 1,479 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 225 | 1,609 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 209 | 2,140 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 189 | 2,042 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 125 | 1,033 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 112 | 1,447 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 122 | 2,123 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 136 | 1,358 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 99 | 1,772 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 110 | 834 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 95 | 1,286 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 84 | 680 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 73 | 334 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 53 | 798 | Submitted | NC_000022.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 315 | 304 | 1 | 4 | 0 | 6 | 4,651 | 4,520 | 1 | 9 | 0 | 121 |
| NC_000002.10 | Chr2 | 365 | 353 | 3 | 6 | 0 | 3 | 2,851 | 2,610 | 97 | 140 | 0 | 4 |
| NC_000003.10 | Chr3 | 266 | 259 | 3 | 1 | 0 | 3 | 2,906 | 2,685 | 216 | 1 | 0 | 4 |
| NC_000004.10 | Chr4 | 337 | 300 | 0 | 7 | 0 | 30 | 3,660 | 3,241 | 2 | 14 | 0 | 403 |
| NC_000005.8 | Chr5 | 261 | 253 | 0 | 2 | 0 | 6 | 2,246 | 2,104 | 26 | 33 | 0 | 83 |
| NC_000006.10 | Chr6 | 250 | 234 | 1 | 0 | 0 | 15 | 2,139 | 1,939 | 1 | 1 | 0 | 198 |
| NC_000007.12 | Chr7 | 290 | 267 | 6 | 7 | 0 | 10 | 2,338 | 1,595 | 321 | 56 | 1 | 365 |
| NC_000008.9 | Chr8 | 256 | 238 | 9 | 3 | 0 | 6 | 2,943 | 2,703 | 71 | 113 | 0 | 56 |
| NC_000009.10 | Chr9 | 220 | 212 | 0 | 2 | 0 | 6 | 1,479 | 1,415 | 0 | 43 | 0 | 21 |
| NC_000010.9 | Chr10 | 225 | 217 | 0 | 2 | 0 | 6 | 1,609 | 1,288 | 9 | 79 | 0 | 233 |
| NC_000011.8 | Chr11 | 209 | 203 | 1 | 2 | 0 | 3 | 2,140 | 2,133 | 1 | 2 | 0 | 4 |
| NC_000012.10 | Chr12 | 189 | 187 | 0 | 0 | 0 | 2 | 2,042 | 2,040 | 0 | 0 | 0 | 2 |
| NC_000013.9 | Chr13 | 125 | 125 | 0 | 0 | 0 | 0 | 1,033 | 1,033 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 112 | 106 | 3 | 0 | 0 | 3 | 1,447 | 1,022 | 139 | 0 | 0 | 286 |
| NC_000015.8 | Chr15 | 122 | 116 | 3 | 2 | 0 | 1 | 2,123 | 1,665 | 11 | 430 | 16 | 1 |
| NC_000016.8 | Chr16 | 136 | 134 | 0 | 0 | 0 | 2 | 1,358 | 1,242 | 0 | 0 | 0 | 116 |
| NC_000017.9 | Chr17 | 99 | 86 | 2 | 2 | 0 | 9 | 1,772 | 842 | 384 | 25 | 0 | 521 |
| NC_000018.8 | Chr18 | 110 | 106 | 1 | 0 | 0 | 3 | 834 | 818 | 1 | 0 | 0 | 15 |
| NC_000019.8 | Chr19 | 95 | 81 | 2 | 3 | 0 | 9 | 1,286 | 956 | 98 | 14 | 0 | 218 |
| NC_000020.9 | Chr20 | 84 | 83 | 1 | 0 | 0 | 0 | 680 | 674 | 6 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 73 | 70 | 0 | 0 | 0 | 3 | 334 | 280 | 0 | 0 | 0 | 54 |
| NC_000022.9 | Chr22 | 53 | 50 | 1 | 2 | 0 | 0 | 798 | 724 | 15 | 58 | 0 | 1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 315 | 282 | 13 | 5 | 1 | 14 | 4,651 | 3,655 | 302 | 63 | 9 | 622 |
| NC_000002.10 | Chr2 | 365 | 348 | 5 | 5 | 0 | 7 | 2,851 | 2,466 | 188 | 105 | 0 | 92 |
| NC_000003.10 | Chr3 | 266 | 251 | 6 | 0 | 0 | 9 | 2,906 | 2,587 | 16 | 0 | 0 | 303 |
| NC_000004.10 | Chr4 | 337 | 292 | 26 | 6 | 0 | 13 | 3,660 | 3,174 | 106 | 13 | 0 | 367 |
| NC_000005.8 | Chr5 | 261 | 250 | 2 | 2 | 0 | 7 | 2,246 | 2,137 | 29 | 33 | 0 | 47 |
| NC_000006.10 | Chr6 | 250 | 228 | 3 | 2 | 1 | 16 | 2,139 | 1,927 | 4 | 31 | 6 | 171 |
| NC_000007.12 | Chr7 | 290 | 251 | 15 | 10 | 2 | 12 | 2,338 | 1,469 | 506 | 129 | 36 | 198 |
| NC_000008.9 | Chr8 | 256 | 218 | 12 | 2 | 0 | 24 | 2,943 | 2,413 | 53 | 112 | 0 | 365 |
| NC_000009.10 | Chr9 | 220 | 206 | 0 | 7 | 3 | 4 | 1,479 | 1,304 | 19 | 89 | 29 | 38 |
| NC_000010.9 | Chr10 | 225 | 205 | 11 | 2 | 2 | 5 | 1,609 | 1,144 | 60 | 226 | 93 | 86 |
| NC_000011.8 | Chr11 | 209 | 192 | 8 | 1 | 0 | 8 | 2,140 | 2,044 | 22 | 1 | 0 | 73 |
| NC_000012.10 | Chr12 | 189 | 174 | 0 | 0 | 0 | 15 | 2,042 | 1,602 | 0 | 0 | 0 | 440 |
| NC_000013.9 | Chr13 | 125 | 123 | 1 | 0 | 0 | 1 | 1,033 | 1,021 | 1 | 3 | 0 | 8 |
| NC_000014.7 | Chr14 | 112 | 92 | 8 | 3 | 0 | 9 | 1,447 | 680 | 107 | 175 | 164 | 321 |
| NC_000015.8 | Chr15 | 122 | 106 | 3 | 3 | 0 | 10 | 2,123 | 1,550 | 31 | 438 | 3 | 101 |
| NC_000016.8 | Chr16 | 136 | 122 | 3 | 2 | 0 | 9 | 1,358 | 1,163 | 10 | 125 | 0 | 60 |
| NC_000017.9 | Chr17 | 99 | 74 | 8 | 1 | 0 | 16 | 1,772 | 619 | 480 | 4 | 0 | 669 |
| NC_000018.8 | Chr18 | 110 | 101 | 3 | 0 | 0 | 6 | 834 | 809 | 3 | 0 | 0 | 22 |
| NC_000019.8 | Chr19 | 95 | 74 | 6 | 0 | 0 | 15 | 1,286 | 1,097 | 36 | 0 | 0 | 153 |
| NC_000020.9 | Chr20 | 84 | 82 | 2 | 0 | 0 | 0 | 680 | 673 | 7 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 73 | 56 | 12 | 0 | 0 | 5 | 334 | 256 | 18 | 0 | 0 | 60 |
| NC_000022.9 | Chr22 | 53 | 38 | 11 | 3 | 0 | 1 | 798 | 647 | 126 | 11 | 0 | 14 |
Samplesets
Number of Samplesets: 2
- Sampleset ID:
- 1
- Name:
- Swiss
- Description:
- The Swiss population consisted of 717 healthy, young individuals. Samples were genotyped using the Affymetrix Genome-Wide Human SNP Array 6.0 following manufacturer’s recommendations.
- Size:
- 717
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sex:
- Unknown
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| SW_0225 | SW_0225 | Unknown | Central European | Not reported |
| SW_0015 | SW_0015 | Unknown | Central European | Not reported |
| SW_0202 | SW_0202 | Unknown | Central European | Not reported |
| SW_0145 | SW_0145 | Unknown | Central European | Not reported |
| SW_0019 | SW_0019 | Unknown | Central European | Not reported |
| SW_0009 | SW_0009 | Unknown | Central European | Not reported |
| SW_0186 | SW_0186 | Unknown | Central European | Not reported |
| SW_0046 | SW_0046 | Unknown | Central European | Not reported |
| SW_0005 | SW_0005 | Unknown | Central European | Not reported |
| SW_0057 | SW_0057 | Unknown | Central European | Not reported |
| SW_0203 | SW_0203 | Unknown | Central European | Not reported |
| SW_0198 | SW_0198 | Unknown | Central European | Not reported |
| SW_0071 | SW_0071 | Unknown | Central European | Not reported |
| SW_0007 | SW_0007 | Unknown | Central European | Not reported |
| SW_0169 | SW_0169 | Unknown | Central European | Not reported |
| SW_0085 | SW_0085 | Unknown | Central European | Not reported |
| SW_0116 | SW_0116 | Unknown | Central European | Not reported |
| SW_0089 | SW_0089 | Unknown | Central European | Not reported |
| SW_0044 | SW_0044 | Unknown | Central European | Not reported |
| SW_0164 | SW_0164 | Unknown | Central European | Not reported |
| SW_0149 | SW_0149 | Unknown | Central European | Not reported |
| SW_0032 | SW_0032 | Unknown | Central European | Not reported |
| SW_0020 | SW_0020 | Unknown | Central European | Not reported |
| SW_0199 | SW_0199 | Unknown | Central European | Not reported |
| SW_0088 | SW_0088 | Unknown | Central European | Not reported |
| SW_0142 | SW_0142 | Unknown | Central European | Not reported |
| SW_0086 | SW_0086 | Unknown | Central European | Not reported |
| SW_0158 | SW_0158 | Unknown | Central European | Not reported |
| SW_0115 | SW_0115 | Unknown | Central European | Not reported |
| SW_0159 | SW_0159 | Unknown | Central European | Not reported |
| SW_0171 | SW_0171 | Unknown | Central European | Not reported |
| SW_0144 | SW_0144 | Unknown | Central European | Not reported |
| SW_0099 | SW_0099 | Unknown | Central European | Not reported |
| SW_0102 | SW_0102 | Unknown | Central European | Not reported |
| SW_0077 | SW_0077 | Unknown | Central European | Not reported |
| SW_0175 | SW_0175 | Unknown | Central European | Not reported |
| SW_0033 | SW_0033 | Unknown | Central European | Not reported |
| SW_0191 | SW_0191 | Unknown | Central European | Not reported |
| SW_0176 | SW_0176 | Unknown | Central European | Not reported |
| SW_0165 | SW_0165 | Unknown | Central European | Not reported |
| SW_0045 | SW_0045 | Unknown | Central European | Not reported |
| SW_0214 | SW_0214 | Unknown | Central European | Not reported |
| SW_0016 | SW_0016 | Unknown | Central European | Not reported |
| SW_0190 | SW_0190 | Unknown | Central European | Not reported |
| SW_0076 | SW_0076 | Unknown | Central European | Not reported |
| SW_0004 | SW_0004 | Unknown | Central European | Not reported |
| SW_0216 | SW_0216 | Unknown | Central European | Not reported |
| SW_0215 | SW_0215 | Unknown | Central European | Not reported |
| SW_0173 | SW_0173 | Unknown | Central European | Not reported |
| SW_0021 | SW_0021 | Unknown | Central European | Not reported |
| SW_0048 | SW_0048 | Unknown | Central European | Not reported |
| SW_0101 | SW_0101 | Unknown | Central European | Not reported |
| SW_0061 | SW_0061 | Unknown | Central European | Not reported |
| SW_0100 | SW_0100 | Unknown | Central European | Not reported |
| SW_0043 | SW_0043 | Unknown | Central European | Not reported |
| SW_0141 | SW_0141 | Unknown | Central European | Not reported |
| SW_0031 | SW_0031 | Unknown | Central European | Not reported |
| SW_0062 | SW_0062 | Unknown | Central European | Not reported |
| SW_0063 | SW_0063 | Unknown | Central European | Not reported |
| SW_0113 | SW_0113 | Unknown | Central European | Not reported |
| SW_0120 | SW_0120 | Unknown | Central European | Not reported |
| SW_0006 | SW_0006 | Unknown | Central European | Not reported |
| SW_0170 | SW_0170 | Unknown | Central European | Not reported |
| SW_0121 | SW_0121 | Unknown | Central European | Not reported |
| SW_0119 | SW_0119 | Unknown | Central European | Not reported |
| SW_0047 | SW_0047 | Unknown | Central European | Not reported |
| SW_0189 | SW_0189 | Unknown | Central European | Not reported |
| SW_0183 | SW_0183 | Unknown | Central European | Not reported |
| SW_0148 | SW_0148 | Unknown | Central European | Not reported |
| SW_0017 | SW_0017 | Unknown | Central European | Not reported |
| SW_0002 | SW_0002 | Unknown | Central European | Not reported |
| SW_0072 | SW_0072 | Unknown | Central European | Not reported |
| SW_0049 | SW_0049 | Unknown | Central European | Not reported |
| SW_0073 | SW_0073 | Unknown | Central European | Not reported |
| SW_0211 | SW_0211 | Unknown | Central European | Not reported |
| SW_0029 | SW_0029 | Unknown | Central European | Not reported |
| SW_0030 | SW_0030 | Unknown | Central European | Not reported |
| SW_0201 | SW_0201 | Unknown | Central European | Not reported |
| SW_0060 | SW_0060 | Unknown | Central European | Not reported |
| SW_0059 | SW_0059 | Unknown | Central European | Not reported |
| SW_0147 | SW_0147 | Unknown | Central European | Not reported |
| SW_0155 | SW_0155 | Unknown | Central European | Not reported |
| SW_0187 | SW_0187 | Unknown | Central European | Not reported |
| SW_0058 | SW_0058 | Unknown | Central European | Not reported |
| SW_0200 | SW_0200 | Unknown | Central European | Not reported |
| SW_0172 | SW_0172 | Unknown | Central European | Not reported |
| SW_0185 | SW_0185 | Unknown | Central European | Not reported |
| SW_0184 | SW_0184 | Unknown | Central European | Not reported |
| SW_0146 | SW_0146 | Unknown | Central European | Not reported |
| SW_0090 | SW_0090 | Unknown | Central European | Not reported |
| SW_0197 | SW_0197 | Unknown | Central European | Not reported |
| SW_0160 | SW_0160 | Unknown | Central European | Not reported |
| SW_0008 | SW_0008 | Unknown | Central European | Not reported |
| SW_0091 | SW_0091 | Unknown | Central European | Not reported |
| SW_0001 | SW_0001 | Unknown | Central European | Not reported |
| SW_0018 | SW_0018 | Unknown | Central European | Not reported |
| SW_0103 | SW_0103 | Unknown | Central European | Not reported |
| SW_0143 | SW_0143 | Unknown | Central European | Not reported |
| SW_0003 | SW_0003 | Unknown | Central European | Not reported |
| SW_0118 | SW_0118 | Unknown | Central European | Not reported |
- Sampleset ID:
- 2
- Name:
- Rwandese
- Description:
- The Rwandese sample is comprised of 450 survivors of the Rwandese Civil War recruited in the Nakivale refugee camp, Uganda
- Size:
- 450
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sex:
- Unknown
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| RW_0018 | RW_0018 | Unknown | Sub-Saharan African | Not reported |
| RW_0004 | RW_0004 | Unknown | Sub-Saharan African | Not reported |
| RW_0029 | RW_0029 | Unknown | Sub-Saharan African | Not reported |
| RW_0033 | RW_0033 | Unknown | Sub-Saharan African | Not reported |
| RW_0106 | RW_0106 | Unknown | Sub-Saharan African | Not reported |
| RW_0053 | RW_0053 | Unknown | Sub-Saharan African | Not reported |
| RW_0032 | RW_0032 | Unknown | Sub-Saharan African | Not reported |
| RW_0073 | RW_0073 | Unknown | Sub-Saharan African | Not reported |
| RW_0046 | RW_0046 | Unknown | Sub-Saharan African | Not reported |
| RW_0014 | RW_0014 | Unknown | Sub-Saharan African | Not reported |
| RW_0020 | RW_0020 | Unknown | Sub-Saharan African | Not reported |
| RW_0090 | RW_0090 | Unknown | Sub-Saharan African | Not reported |
| RW_0072 | RW_0072 | Unknown | Sub-Saharan African | Not reported |
| RW_0054 | RW_0054 | Unknown | Sub-Saharan African | Not reported |
| RW_0030 | RW_0030 | Unknown | Sub-Saharan African | Not reported |
| RW_0062 | RW_0062 | Unknown | Sub-Saharan African | Not reported |
| RW_0060 | RW_0060 | Unknown | Sub-Saharan African | Not reported |
| RW_0042 | RW_0042 | Unknown | Sub-Saharan African | Not reported |
| RW_0104 | RW_0104 | Unknown | Sub-Saharan African | Not reported |
| RW_0091 | RW_0091 | Unknown | Sub-Saharan African | Not reported |
| RW_0070 | RW_0070 | Unknown | Sub-Saharan African | Not reported |
| RW_0077 | RW_0077 | Unknown | Sub-Saharan African | Not reported |
| RW_0023 | RW_0023 | Unknown | Sub-Saharan African | Not reported |
| RW_0082 | RW_0082 | Unknown | Sub-Saharan African | Not reported |
| RW_0047 | RW_0047 | Unknown | Sub-Saharan African | Not reported |
| RW_0005 | RW_0005 | Unknown | Sub-Saharan African | Not reported |
| RW_0101 | RW_0101 | Unknown | Sub-Saharan African | Not reported |
| RW_0065 | RW_0065 | Unknown | Sub-Saharan African | Not reported |
| RW_0050 | RW_0050 | Unknown | Sub-Saharan African | Not reported |
| RW_0107 | RW_0107 | Unknown | Sub-Saharan African | Not reported |
| RW_0031 | RW_0031 | Unknown | Sub-Saharan African | Not reported |
| RW_0025 | RW_0025 | Unknown | Sub-Saharan African | Not reported |
| RW_0085 | RW_0085 | Unknown | Sub-Saharan African | Not reported |
| RW_0118 | RW_0118 | Unknown | Sub-Saharan African | Not reported |
| RW_0058 | RW_0058 | Unknown | Sub-Saharan African | Not reported |
| RW_0114 | RW_0114 | Unknown | Sub-Saharan African | Not reported |
| RW_0117 | RW_0117 | Unknown | Sub-Saharan African | Not reported |
| RW_0080 | RW_0080 | Unknown | Sub-Saharan African | Not reported |
| RW_0003 | RW_0003 | Unknown | Sub-Saharan African | Not reported |
| RW_0071 | RW_0071 | Unknown | Sub-Saharan African | Not reported |
| RW_0063 | RW_0063 | Unknown | Sub-Saharan African | Not reported |
| RW_0012 | RW_0012 | Unknown | Sub-Saharan African | Not reported |
| RW_0096 | RW_0096 | Unknown | Sub-Saharan African | Not reported |
| RW_0094 | RW_0094 | Unknown | Sub-Saharan African | Not reported |
| RW_0008 | RW_0008 | Unknown | Sub-Saharan African | Not reported |
| RW_0043 | RW_0043 | Unknown | Sub-Saharan African | Not reported |
| RW_0108 | RW_0108 | Unknown | Sub-Saharan African | Not reported |
| RW_0105 | RW_0105 | Unknown | Sub-Saharan African | Not reported |
| RW_0074 | RW_0074 | Unknown | Sub-Saharan African | Not reported |
| RW_0059 | RW_0059 | Unknown | Sub-Saharan African | Not reported |
| RW_0013 | RW_0013 | Unknown | Sub-Saharan African | Not reported |
| RW_0112 | RW_0112 | Unknown | Sub-Saharan African | Not reported |
| RW_0095 | RW_0095 | Unknown | Sub-Saharan African | Not reported |
| RW_0048 | RW_0048 | Unknown | Sub-Saharan African | Not reported |
| RW_0024 | RW_0024 | Unknown | Sub-Saharan African | Not reported |
| RW_0111 | RW_0111 | Unknown | Sub-Saharan African | Not reported |
| RW_0103 | RW_0103 | Unknown | Sub-Saharan African | Not reported |
| RW_0011 | RW_0011 | Unknown | Sub-Saharan African | Not reported |
| RW_0061 | RW_0061 | Unknown | Sub-Saharan African | Not reported |
| RW_0088 | RW_0088 | Unknown | Sub-Saharan African | Not reported |
| RW_0001 | RW_0001 | Unknown | Sub-Saharan African | Not reported |
| RW_0087 | RW_0087 | Unknown | Sub-Saharan African | Not reported |
| RW_0010 | RW_0010 | Unknown | Sub-Saharan African | Not reported |
| RW_0079 | RW_0079 | Unknown | Sub-Saharan African | Not reported |
| RW_0120 | RW_0120 | Unknown | Sub-Saharan African | Not reported |
| RW_0057 | RW_0057 | Unknown | Sub-Saharan African | Not reported |
| RW_0119 | RW_0119 | Unknown | Sub-Saharan African | Not reported |
| RW_0084 | RW_0084 | Unknown | Sub-Saharan African | Not reported |
| RW_0068 | RW_0068 | Unknown | Sub-Saharan African | Not reported |
| RW_0002 | RW_0002 | Unknown | Sub-Saharan African | Not reported |
| RW_0113 | RW_0113 | Unknown | Sub-Saharan African | Not reported |
| RW_0039 | RW_0039 | Unknown | Sub-Saharan African | Not reported |
| RW_0045 | RW_0045 | Unknown | Sub-Saharan African | Not reported |
| RW_0049 | RW_0049 | Unknown | Sub-Saharan African | Not reported |
| RW_0075 | RW_0075 | Unknown | Sub-Saharan African | Not reported |
| RW_0067 | RW_0067 | Unknown | Sub-Saharan African | Not reported |
| RW_0100 | RW_0100 | Unknown | Sub-Saharan African | Not reported |
| RW_0038 | RW_0038 | Unknown | Sub-Saharan African | Not reported |
| RW_0034 | RW_0034 | Unknown | Sub-Saharan African | Not reported |
| RW_0098 | RW_0098 | Unknown | Sub-Saharan African | Not reported |
| RW_0028 | RW_0028 | Unknown | Sub-Saharan African | Not reported |
| RW_0064 | RW_0064 | Unknown | Sub-Saharan African | Not reported |
| RW_0115 | RW_0115 | Unknown | Sub-Saharan African | Not reported |
| RW_0099 | RW_0099 | Unknown | Sub-Saharan African | Not reported |
| RW_0056 | RW_0056 | Unknown | Sub-Saharan African | Not reported |
| RW_0041 | RW_0041 | Unknown | Sub-Saharan African | Not reported |
| RW_0017 | RW_0017 | Unknown | Sub-Saharan African | Not reported |
| RW_0121 | RW_0121 | Unknown | Sub-Saharan African | Not reported |
| RW_0116 | RW_0116 | Unknown | Sub-Saharan African | Not reported |
| RW_0078 | RW_0078 | Unknown | Sub-Saharan African | Not reported |
| RW_0021 | RW_0021 | Unknown | Sub-Saharan African | Not reported |
| RW_0110 | RW_0110 | Unknown | Sub-Saharan African | Not reported |
| RW_0006 | RW_0006 | Unknown | Sub-Saharan African | Not reported |
| RW_0093 | RW_0093 | Unknown | Sub-Saharan African | Not reported |
| RW_0122 | RW_0122 | Unknown | Sub-Saharan African | Not reported |
| RW_0092 | RW_0092 | Unknown | Sub-Saharan African | Not reported |
| RW_0022 | RW_0022 | Unknown | Sub-Saharan African | Not reported |
| RW_0036 | RW_0036 | Unknown | Sub-Saharan African | Not reported |
| RW_0069 | RW_0069 | Unknown | Sub-Saharan African | Not reported |
| RW_0007 | RW_0007 | Unknown | Sub-Saharan African | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | SNP array | SNP genotyping analysis | Affymetrix 6.0 Human SNP Array | 0 |
| 2 | Discovery | SNP array | SNP genotyping analysis | Affymetrix 6.0 Human SNP Array | 0 |
| 3 | Discovery | Merging of experiments 1,2 | Merging of experiments 1,2 | See merged experiments | 42,669 |