Guide to the features annotated on scaffolds and chromosomes. The note provides information on the origin of the feature. *For predicted models, the note is also on the records of individual annotation products.
| Annotated Product | Accession prefix | Origin of the product | Note provided for the feature annotated on scaffolds and chromosomes records* |
|---|---|---|---|
| Known transcripts/proteins | NM_, NR_, NP_ | Curated RefSeq genomic alignment | Derived by automated computational analysis using gene prediction method: Curated Genomic |
| Known transcripts/proteins | NM_, NR_, NP_ | Known RefSeq transcript alignment | Derived by automated computational analysis using gene prediction method: BestRefseq |
| Model transcripts/proteins | XM_, XR_, XP_ | Gnomon | Derived by automated computational analysis using gene prediction method: Gnomon |
| tRNAs | no accession | tRNAscan-SE | tRNA features were annotated by tRNAscan-SE |
| RefSeq non-transcribed pseudogenes | no accession | Curated RefSeq genomic alignment | Derived by automated computational analysis using gene prediction method: Curated Genomic |
| Gnomon non-transcribed pseudogenes | no accession | Gnomon | Derived by automated computational analysis using gene prediction method: Gnomon |
| Full set of Gnomon predictions | no accession | Gnomon | Not in the sequence database. Available on the FTP site and as BLAST databases. |
From: Eukaryotic Genome Annotation Pipeline
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