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SRX476512: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar str. IEH_NGS_SAL_00171 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 588,214 spots, 170.4M bases, 108.6Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen sample from Salmonella enterica
SAMN01920956 • SRS465366 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica
Library:
Name: Salmonella enterica str. IEH_NGS_SAL_00171 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar str. IEH_NGS_SAL_00171.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.42
Runs: 1 run, 588,214 spots, 170.4M bases, 108.6Mb
Run# of Spots# of BasesSizePublished
SRR1177325588,214170.4M108.6Mb2014-02-26

ID:
665591

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