Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX340272: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar str. IEH_NGS_SAL_00162 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 769,464 spots, 360.9M bases, 197Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen sample from Salmonella enterica

SAMN01920947 • SRS473982 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica

Library:

Name: Salmonella enterica str. CFSAN002757_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar str. IEH_NGS_SAL_00162.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.17.28

Runs: 1 run, 769,464 spots, 360.9M bases, 197Mb

Run	# of Spots	# of Bases	Size	Published
SRR958025	769,464	360.9M	197Mb	2013-08-27

ID:: 478056

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