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SRX332998: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium str. IEH_NGS_SAL_00156 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 304.4M bases, 201Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen sample from Salmonella enterica
SAMN01920941 • SRS468416 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Typhimurium
Library:
Name: Salmonella enterica str. CFSAN002858_01 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumia Nextera XT library created for Salmonella enterica subsp. enterica serovar Typhimurium str. IEH_NGS_SAL_00156.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA3.2.1
Runs: 1 run, 1.1M spots, 304.4M bases, 201Mb
Run# of Spots# of BasesSizePublished
SRR9495211,128,614304.4M201Mb2013-08-08

ID:
468016

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