GBMF Marine Phage Sequencing Project - SRA

SRX042698: GBMF Marine Phage Sequencing Project
1 LS454 (454 GS FLX Titanium) run: 5,858 spots, 2.5M bases, 5.9Mb downloads

UUID: b890af1e-2419-4517-90ec-9476e2a02c98

Design: International collaboration to sequence, assemble, and annotate approximately 200 diverse marine phage/virus genomes and to sequence approximately 50 viral metagenomes from an array of marine environments. DNA sequencing using 454 technology.

Submitted by: Broad Institute (BI)

Study: Tetraselmis viridis virus S1 genome sequencing project

PRJNA47887 • SRP005837 • All experiments • All runs

Sample: Generic sample from Tetraselmis viridis virus S1

SAMN00215908 • SRS172839 • All experiments • All runs

Organism: Tetraselmis viridis virus S1

Library:

Name: 454-4248

Instrument: 454 GS FLX Titanium

Strategy: WGS

Source: GENOMIC

Selection: PCR

Layout: SINGLE

Spot descriptor:

barcode

Group tag	Basecalls
	CCAACCGGC

14 forward

Experiment attributes: (show all 8 attributes...) (hide...)

analysis_type: DNA Viral 454 Alignment and Assembly

gssr_id: 39917.0

lsid: broadinstitute.org:bsp.prod.sample:WGSY

material_type: DNA:ds Viral DNA

project: G2774

root_sample_id: SM-TND8

sample_id: SM-WGSY

work_request: 20428

Pipeline: show...hide...

Name	Step	Program	Version
base caller	2010-03-27 22:12:08.0	454BaseCaller	2.3

Runs: 1 run, 5,858 spots, 2.5M bases, 5.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR101169	5,858	2.5M	5.9Mb	2011-06-30

ID:: 50970

SRA

Sequence Read Archive

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