PMC Links for Taxonomy (Select 203682) - PMC

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Select item 33844671.

Evolutionary patterns of carbohydrate transport and metabolism in Halomonas boliviensis as derived from its genome sequence: influences on polyester production

Daniel Guzmán, Andrea Balderrama-Subieta, Carla Cardona-Ortuño, Mónica Guevara-Martínez, Nataly Callisaya-Quispe, Jorge Quillaguamán

Aquat Biosyst. 2012; 8: 9. Published online 2012 Apr 17. doi: 10.1186/2046-9063-8-9

PMCID:: PMC3384467

Abstract Article PDF–4.2M

Select item 33828082.

Diversity and Biosynthetic Potential of Culturable Actinomycetes Associated with Marine Sponges in the China Seas

Lijun Xi, Jisheng Ruan, Ying Huang

Int J Mol Sci. 2012; 13(5): 5917–5932. Published online 2012 May 16. doi: 10.3390/ijms13055917

PMCID:: PMC3382808

Abstract Article PDF–441K

Select item 33808943.

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

Fernando Dini Andreote, Diego Javier Jiménez, Diego Chaves, Armando Cavalcante Franco Dias, Danice Mazzer Luvizotto, Francisco Dini-Andreote, Cristiane Cipola Fasanella, Maryeimy Varon Lopez, Sandra Baena, Rodrigo Gouvêa Taketani, Itamar Soares de Melo

PLoS One. 2012; 7(6): e38600. Published online 2012 Jun 21. doi: 10.1371/journal.pone.0038600

PMCID:: PMC3380894

Abstract Article PDF–3.0M

Select item 33796374.

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

Lisa Zeigler Allen, Eric E Allen, Jonathan H Badger, John P McCrow, Ian T Paulsen, Liam DH Elbourne, Mathangi Thiagarajan, Doug B Rusch, Kenneth H Nealson, Shannon J Williamson, J Craig Venter, Andrew E Allen

ISME J. 2012 Jul; 6(7): 1403–1414. Published online 2012 Jan 26. doi: 10.1038/ismej.2011.201

PMCID:: PMC3379637

Abstract Article PDF–953K

Select item 33755795.

Fine-Scale Community Structure Analysis of ANME in Nyegga Sediments with High and Low Methane Flux

Irene Roalkvam, Håkon Dahle, Yifeng Chen, Steffen Leth Jørgensen, Haflidi Haflidason, Ida Helene Steen

Front Microbiol. 2012; 3: 216. Published online 2012 Jun 15. doi: 10.3389/fmicb.2012.00216

PMCID:: PMC3375579

Abstract Article PDF–1.8M

Select item 33734946.

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability

James R. White, Jignasa Patel, Andrea Ottesen, Gabriela Arce, Patricia Blackwelder, Jose V. Lopez

PLoS One. 2012; 7(6): e38204. Published online 2012 Jun 12. doi: 10.1371/journal.pone.0038204

PMCID:: PMC3373494

Abstract Article PDF–721K

Select item 33722907.

The zinc-ribbon domain of Helicobacter pylori HP0958: requirement for RpoN accumulation and possible roles of homologs in other bacteria

Lara E Pereira, Jennifer Tsang, Jan Mrázek, Timothy R Hoover

Microb Inform Exp. 2011; 1: 8. Published online 2011 Aug 23. doi: 10.1186/2042-5783-1-8

PMCID:: PMC3372290

Abstract Article PDF–1.0M

Select item 33722518.

The AlternativeTranslational Profile That Underlies the Immune-Evasive State of Persistence in Chlamydiaceae Exploits Differential Tryptophan Contents of the Protein Repertoire

Chien-Chi Lo, Gary Xie, Carol A. Bonner, Roy A. Jensen

Microbiol Mol Biol Rev. 2012 Jun; 76(2): 405–443. doi: 10.1128/MMBR.05013-11

PMCID:: PMC3372251

Abstract Article PDF–7.7M

Select item 33705039.

Influence of Salinity on the Bacterial Community Composition in Lake Bosten, a Large Oligosaline Lake in Arid Northwestern China

Xiangming Tang, Guijuan Xie, Keqiang Shao, Sai·Bayartu, Yuangao Chen, Guang Gao

Appl Environ Microbiol. 2012 Jul; 78(13): 4748–4751. doi: 10.1128/AEM.07806-11

PMCID:: PMC3370503

Abstract Article PDF–1.0M

Select item 337050110.

Shifts in Identity and Activity of Methanotrophs in Arctic Lake Sediments in Response to Temperature Changes

Ruo He, Matthew J. Wooller, John W. Pohlman, John Quensen, James M. Tiedje, Mary Beth Leigh

Appl Environ Microbiol. 2012 Jul; 78(13): 4715–4723. doi: 10.1128/AEM.00853-12

PMCID:: PMC3370501

Abstract Article PDF–885K

Select item 337048011.

High-Resolution Analysis of Gut Environment and Bacterial Microbiota Reveals Functional Compartmentation of the Gut in Wood-Feeding Higher Termites (Nasutitermes spp.)

Tim Köhler, Carsten Dietrich, Rudolf H. Scheffrahn, Andreas Brune

Appl Environ Microbiol. 2012 Jul; 78(13): 4691–4701. doi: 10.1128/AEM.00683-12

PMCID:: PMC3370480

Abstract Article PDF–901K

Select item 336824312.

The State of Standards in Genomic Sciences

George M. Garrity

Stand Genomic Sci. 2011 Dec 31; 5(3): 262–268. Published online 2011 Dec 31. doi: 10.4650/sigs.2515706

PMCID:: PMC3368243

Article PDF–280K

Select item 336702313.

Coordinating Environmental Genomics and Geochemistry Reveals Metabolic Transitions in a Hot Spring Ecosystem

Wesley D. Swingley, D’Arcy R. Meyer-Dombard, Everett L. Shock, Eric B. Alsop, Heinz D. Falenski, Jeff R. Havig, Jason Raymond

PLoS One. 2012; 7(6): e38108. Published online 2012 Jun 4. doi: 10.1371/journal.pone.0038108

PMCID:: PMC3367023

Abstract Article PDF–981K

Select item 336687614.

Phylogenetic and functional diversity of metagenomic libraries of phenol degrading sludge from petroleum refinery wastewater treatment system

Cynthia C Silva, Helen Hayden, Tim Sawbridge, Pauline Mele, Ricardo H Kruger, Marili VN Rodrigues, Gustavo GL Costa, Ramon O Vidal, Maíra P Sousa, Ana Paula R Torres, Vânia MJ Santiago, Valéria M Oliveira

AMB Express. 2012; 2: 18. Published online 2012 Mar 27. doi: 10.1186/2191-0855-2-18

PMCID:: PMC3366876

Abstract Article PDF–770K

Select item 336423515.

Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge

Ke Yu, Tong Zhang

PLoS One. 2012; 7(5): e38183. Published online 2012 May 30. doi: 10.1371/journal.pone.0038183

Correction in:: PLoS One. 2020; 15(11): e0243233.

PMCID:: PMC3364235

Abstract Article PDF–3.9M

Select item 335803416.

Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria

Thorsten Brinkhoff, Doreen Fischer, John Vollmers, Sonja Voget, Christine Beardsley, Sebastian Thole, Marc Mussmann, Brigitte Kunze, Irene Wagner-Döbler, Rolf Daniel, Meinhard Simon

ISME J. 2012 Jun; 6(6): 1260–1272. Published online 2011 Dec 22. doi: 10.1038/ismej.2011.190

PMCID:: PMC3358034

Abstract Article PDF–699K

Select item 335803217.

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

Tong Zhang, Ming-Fei Shao, Lin Ye

ISME J. 2012 Jun; 6(6): 1137–1147. Published online 2011 Dec 15. doi: 10.1038/ismej.2011.188

PMCID:: PMC3358032

Abstract Article PDF–652K

Select item 335802718.

Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella

Lars Behrendt, Anthony W D Larkum, Erik Trampe, Anders Norman, Søren J Sørensen, Michael Kühl

ISME J. 2012 Jun; 6(6): 1222–1237. Published online 2011 Dec 1. doi: 10.1038/ismej.2011.181

PMCID:: PMC3358027

Abstract Article PDF–1.0M

Select item 335397219.

Phylogenomics of Prokaryotic Ribosomal Proteins

Natalya Yutin, Pere Puigbò, Eugene V. Koonin, Yuri I. Wolf

PLoS One. 2012; 7(5): e36972. Published online 2012 May 16. doi: 10.1371/journal.pone.0036972

PMCID:: PMC3353972

Abstract Article PDF–3.0M

Select item 335372520.

PhyloChip microarray analysis reveals altered gastrointestinal microbial communities in a rat model of colonic hypersensitivity

T. A. NELSON, S. HOLMES, A. V. ALEKSEYENKO, M. SHENOY, T. DESANTIS, C. H. WU, G. L. ANDERSEN, J. WINSTON, J. SONNENBURG, P. J. PASRICHA, A. SPORMANN

Neurogastroenterol Motil. Author manuscript; available in PMC 2012 May 16.

Published in final edited form as: Neurogastroenterol Motil. 2011 Feb; 23(2): 169–e42. Published online 2010 Dec 3. doi: 10.1111/j.1365-2982.2010.01637.x