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Items: 1 to 20 of 713

1.
The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT
Chetan Bettegowda, Xin Huang, Jimmy Lin, Ian Cheong, Manu Kohli, Stephen A Szabo, Xiaosong Zhang, Luis A Diaz, Jr, Victor E Velculescu, Giovanni Parmigiani, Kenneth W Kinzler, Bert Vogelstein, Shibin Zhou
Nat Biotechnol. Author manuscript; available in PMC 2022 Jul 30.
Published in final edited form as: Nat Biotechnol. 2006 Dec; 24(12): 1573–1580. Published online 2006 Nov 19. doi: 10.1038/nbt1256
PMCID:
PMC9338427
ArticlePDF–1.1M
2.
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
John F. Heidelberg, Jonathan A. Eisen, William C. Nelson, Rebecca A. Clayton, Michelle L. Gwinn, Robert J. Dodson, Daniel H. Haft, Erin K. Hickey, Jeremy D. Peterson, Lowell Umayam, Steven R. Gill, Karen E. Nelson, Timothy D. Read, Hervé Tettelin, Delwood Richardson, Maria D. Ermolaeva, Jessica Vamathevan, Steven Bass, Haiying Qin, Ioana Dragoi, Patrick Sellers, Lisa McDonald, Teresa Utterback, Robert D. Fleishmann, William C. Nierman, Owen White, Steven L. Salzberg, Hamilton O. Smith, Rita R. Colwell, John J. Mekalanos, J. Craig Venter, Claire M. Fraser
Nature. 2000; 406(6795): 477–483. Published online 2000 Aug 1. doi: 10.1038/35020000
PMCID:
PMC8288016
ArticlePDF–1.5M
3.
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
Susanne Schneiker, Vítor AP Martins dos Santos, Daniela Bartels, Thomas Bekel, Martina Brecht, Jens Buhrmester, Tatyana N Chernikova, Renata Denaro, Manuel Ferrer, Christoph Gertler, Alexander Goesmann, Olga V Golyshina, Filip Kaminski, Amit N Khachane, Siegmund Lang, Burkhard Linke, Alice C McHardy, Folker Meyer, Taras Nechitaylo, Alfred Pühler, Daniela Regenhardt, Oliver Rupp, Julia S Sabirova, Werner Selbitschka, Michail M Yakimov, Kenneth N Timmis, Frank-Jörg Vorhölter, Stefan Weidner, Olaf Kaiser, Peter N Golyshin
Nat Biotechnol. 2006; 24(8): 997–1004. Published online 2006 Jul 30. doi: 10.1038/nbt1232
PMCID:
PMC7416663
ArticlePDF–819K
4.
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5
Ian T Paulsen, Caroline M Press, Jacques Ravel, Donald Y Kobayashi, Garry S A Myers, Dmitri V Mavrodi, Robert T DeBoy, Rekha Seshadri, Qinghu Ren, Ramana Madupu, Robert J Dodson, A Scott Durkin, Lauren M Brinkac, Sean C Daugherty, Stephen A Sullivan, Mary J Rosovitz, Michelle L Gwinn, Liwei Zhou, Davd J Schneider, Samuel W Cartinhour, William C Nelson, Janice Weidman, Kisha Watkins, Kevin Tran, Hoda Khouri, Elizabeth A Pierson, Leland S Pierson, III, Linda S Thomashow, Joyce E Loper
Nat Biotechnol. 2005; 23(7): 873–878. Published online 2005 Jul 1. doi: 10.1038/nbt1110
PMCID:
PMC7416659
ArticlePDF–1.4M
5.
The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4
Jeong-Sun Seo, Hyonyong Chong, Hyun Seok Park, Kyoung-Oh Yoon, Cholhee Jung, Jae Joon Kim, Jin Han Hong, Hyungtae Kim, Jeong-Hyun Kim, Joon-Il Kil, Cheol Ju Park, Hyun-Myung Oh, Jung-Soon Lee, Su-Jung Jin, Hye-Won Um, Hee-Jong Lee, Soo-Jin Oh, Jae Young Kim, Hyung Lyun Kang, Se Yong Lee, Kye Joon Lee, Hyen Sam Kang
Nat Biotechnol. 2005; 23(1): 63–68. Published online 2005 Jan 1. doi: 10.1038/nbt1045
PMCID:
PMC6870993
ArticlePDF–729K
6.
Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1
Owen White, Jonathan A. Eisen, John F. Heidelberg, Erin K. Hickey, Jeremy D. Peterson, Robert J. Dodson, Daniel H. Haft, Michelle L. Gwinn, William C. Nelson, Delwood L. Richardson, Kelly S. Moffat, Haiying Qin, Lingxia Jiang, Wanda Pamphile, Marie Crosby, Mian Shen, Jessica J. Vamathevan, Peter Lam, Lisa McDonald, Terry Utterback, Celeste Zalewski, Kira S. Makarova, L. Aravind, Michael J. Daly, Kenneth W. Minton, Robert D. Fleischmann, Karen A. Ketchum, Karen E. Nelson, Steven Salzberg, Hamilton O. Smith, J. Craig Venter, Claire M. Fraser
Science. Author manuscript; available in PMC 2014 Aug 28.
Published in final edited form as: Science. 1999 Nov 19; 286(5444): 1571–1577. doi: 10.1126/science.286.5444.1571
PMCID:
PMC4147723
ArticlePDF–894K
7.
Complete Genome Sequence of Amino Acid-Utilizing Eubacterium acidaminophilum al-2 (DSM 3953)
Anja Poehlein, Jan R. Andreesen, Rolf Daniel
Genome Announc. 2014 May-Jun; 2(3): e00573-14. Published online 2014 Jun 12. doi: 10.1128/genomeA.00573-14
PMCID:
PMC4056300
ArticlePDF–139K
8.
Insights into the Microbial Degradation of Rubber and Gutta-Percha by Analysis of the Complete Genome of Nocardia nova SH22a
Quan Luo, Sebastian Hiessl, Anja Poehlein, Rolf Daniel, Alexander Steinbüchel
Appl Environ Microbiol. 2014 Jul; 80(13): 3895–3907. doi: 10.1128/AEM.00473-14
PMCID:
PMC4054215
ArticlePDF–2.4M
9.
Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes
Steven Rudder, Fiona Doohan, Christopher J Creevey, Toni Wendt, Ewen Mullins
BMC Genomics. 2014; 15: 268. Published online 2014 Apr 7. doi: 10.1186/1471-2164-15-268
PMCID:
PMC4051167
ArticlePDF–2.1M
10.
Complete Genome of Rhodococcus pyridinivorans SB3094, a Methyl-Ethyl-Ketone-Degrading Bacterium Used for Bioaugmentation
Morten S. Dueholm, Mads Albertsen, Seth D’Imperio, Vaibhav P. Tale, Derrick Lewis, Per Halkjær Nielsen, Jeppe Lund Nielsen
Genome Announc. 2014 May-Jun; 2(3): e00525-14. Published online 2014 May 29. doi: 10.1128/genomeA.00525-14
PMCID:
PMC4038895
ArticlePDF–135K
11.
Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation
Morten S. Dueholm, Mads Albertsen, Seth D’Imperio, Vaibhav P. Tale, Derrick Lewis, Per Halkjær Nielsen, Jeppe Lund Nielsen
Genome Announc. 2014 May-Jun; 2(3): e00524-14. Published online 2014 May 29. doi: 10.1128/genomeA.00524-14
PMCID:
PMC4038894
ArticlePDF–136K
12.
Complete Genome Sequence of Dyella jiangningensis Strain SBZ3-12, Isolated from the Surfaces of Weathered Rock
Yuanyuan Bao, Amy Ho Yan Kwok, Linyan He, Jingwei Jiang, Zhi Huang, Frederick Chi-ching Leung, Xiafang Sheng
Genome Announc. 2014 May-Jun; 2(3): e00416-14. Published online 2014 May 15. doi: 10.1128/genomeA.00416-14
PMCID:
PMC4022811
ArticlePDF–132K
13.
Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia
Steven D Brown, Shilpa Nagaraju, Sagar Utturkar, Sashini De Tissera, Simón Segovia, Wayne Mitchell, Miriam L Land, Asela Dassanayake, Michael Köpke
Biotechnol Biofuels. 2014; 7: 40. Published online 2014 Mar 21. doi: 10.1186/1754-6834-7-40
PMCID:
PMC4022347
ArticlePDF–1.2M
14.
Complete Genome Sequence of Pandoraea pnomenusa 3kgm, a Quorum-Sensing Strain Isolated from a Former Landfill Site
Kok-Gan Chan, Wai-Fong Yin, Share-Yuan Goh
Genome Announc. 2014 May-Jun; 2(3): e00427-14. Published online 2014 May 8. doi: 10.1128/genomeA.00427-14
PMCID:
PMC4014696
ArticlePDF–137K
15.
Complete Genome Sequence of Trueperella pyogenes, an Important Opportunistic Pathogen of Livestock
Vinicius S. Machado, Rodrigo C. Bicalho
Genome Announc. 2014 Mar-Apr; 2(2): e00400-14. Published online 2014 May 1. doi: 10.1128/genomeA.00400-14
PMCID:
PMC4007991
ArticlePDF–136K
16.
Molecular Evolution of the Substrate Utilization Strategies and Putative Virulence Factors in Mosquito-Associated Spiroplasma Species
Tean-Hsu Chang, Wen-Sui Lo, Chuan Ku, Ling-Ling Chen, Chih-Horng Kuo
Genome Biol Evol. 2014 Mar; 6(3): 500–509. Published online 2014 Feb 17. doi: 10.1093/gbe/evu033
PMCID:
PMC3971584
ArticlePDF–1.0M
17.
Genome Sequence of Yersinia similis Y228T, a Member of the Yersinia pseudotuberculosis Complex
Lisa D. Sprague, Heinrich Neubauer
Genome Announc. 2014 Mar-Apr; 2(2): e00216-14. Published online 2014 Mar 27. doi: 10.1128/genomeA.00216-14
PMCID:
PMC3968338
ArticlePDF–127K
18.
Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits
David Goudenège, Yannick Labreuche, Evelyne Krin, Dominique Ansquer, Sophie Mangenot, Alexandra Calteau, Claudine Médigue, Didier Mazel, Martin F Polz, Frédérique Le Roux
ISME J. 2013 Oct; 7(10): 1985–1996. Published online 2013 Jun 6. doi: 10.1038/ismej.2013.90
PMCID:
PMC3965318
ArticlePDF–868K
19.
Comparative Genomic Analysis of N2-Fixing and Non-N2-Fixing Paenibacillus spp.: Organization, Evolution and Expression of the Nitrogen Fixation Genes
Jian-Bo Xie, Zhenglin Du, Lanqing Bai, Changfu Tian, Yunzhi Zhang, Jiu-Yan Xie, Tianshu Wang, Xiaomeng Liu, Xi Chen, Qi Cheng, Sanfeng Chen, Jilun Li
PLoS Genet. 2014 Mar; 10(3): e1004231. Published online 2014 Mar 20. doi: 10.1371/journal.pgen.1004231
PMCID:
PMC3961195
ArticlePDF–5.1M
20.
Complete Genome Sequence of Magnetospirillum gryphiswaldense MSR-1
Xu Wang, Qing Wang, Weijia Zhang, Yinjia Wang, Li Li, Tong Wen, Tongwei Zhang, Yang Zhang, Jun Xu, Junying Hu, Shuqi Li, Lingzi Liu, Jinxin Liu, Wei Jiang, Jiesheng Tian, Ying Li, Dirk Schüler, Lei Wang, Jilun Li
Genome Announc. 2014 Mar-Apr; 2(2): e00171-14. Published online 2014 Mar 13. doi: 10.1128/genomeA.00171-14
PMCID:
PMC3953193
ArticlePDF–137K

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