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Select item 107611661.

A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture

Dennis Kläge, Elisabeth Müller, Jörg S. Hartig

RNA Biol. 2024; 21(1): 1–11. Published online 2023 Dec 25. doi: 10.1080/15476286.2023.2296203

PMCID:: PMC10761166

Abstract Article PDF–1.7M

Select item 105070202.

Ecophysiology and interactions of a taurine-respiring bacterium in the mouse gut

Huimin Ye, Sabrina Borusak, Claudia Eberl, Julia Krasenbrink, Anna S. Weiss, Song-Can Chen, Buck T. Hanson, Bela Hausmann, Craig W. Herbold, Manuel Pristner, Benjamin Zwirzitz, Benedikt Warth, Petra Pjevac, David Schleheck, Bärbel Stecher, Alexander Loy

Nat Commun. 2023; 14: 5533. Published online 2023 Sep 18. doi: 10.1038/s41467-023-41008-z

PMCID:: PMC10507020

Abstract Article PDF–3.0M

Select item 101452753.

2′-Fucosyllactose and 3-Fucosyllactose Alleviates Interleukin-6-Induced Barrier Dysfunction and Dextran Sodium Sulfate-Induced Colitis by Improving Intestinal Barrier Function and Modulating the Intestinal Microbiome

Yeon-Ji Kim, Han-Hae Kim, Chul-Soo Shin, Jong-Won Yoon, Seon-Min Jeon, Young-Ha Song, Kwang-Youn Kim, Kyungho Kim

Nutrients. 2023 Apr; 15(8): 1845. Published online 2023 Apr 12. doi: 10.3390/nu15081845

PMCID:: PMC10145275

Abstract Article PDF–4.6M

Select item 93427684.

MiCloud: A unified web platform for comprehensive microbiome data analysis

Won Gu, Jeongsup Moon, Crispen Chisina, Byungkon Kang, Taesung Park, Hyunwook Koh

PLoS One. 2022; 17(8): e0272354. Published online 2022 Aug 1. doi: 10.1371/journal.pone.0272354

PMCID:: PMC9342768

Abstract Article PDF–1.8M

Select item 89458195.

Mechanistic Insights into Inorganic Nitrite-Mediated Vasodilation of Isolated Aortic Rings under Oxidative/Hypertensive Conditions and S-Nitros(yl)ation of Proteins in Germ-Free Mice

Paul Stamm, Sanela Kalinovic, Matthias Oelze, Sebastian Steven, Alexander Czarnowski, Miroslava Kvandova, Franziska Bayer, Christoph Reinhardt, Thomas Münzel, Andreas Daiber

Biomedicines. 2022 Mar; 10(3): 730. Published online 2022 Mar 21. doi: 10.3390/biomedicines10030730

PMCID:: PMC8945819

Abstract Article PDF–1.1M

Select item 89325666.

Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart

Silas Kieser, Evgeny M. Zdobnov, Mirko Trajkovski

PLoS Comput Biol. 2022 Mar; 18(3): e1009947. Published online 2022 Mar 8. doi: 10.1371/journal.pcbi.1009947

PMCID:: PMC8932566

Abstract Article PDF–48M

Select item 87634047.

The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping

Benjamin S. Beresford-Jones, Samuel C. Forster, Mark D. Stares, George Notley, Elisa Viciani, Hilary P. Browne, Daniel J. Boehmler, Amelia T. Soderholm, Nitin Kumar, Kevin Vervier, Justin R. Cross, Alexandre Almeida, Trevor D. Lawley, Virginia A. Pedicord

Cell Host Microbe. 2022 Jan 12; 30(1): 124–138.e8. doi: 10.1016/j.chom.2021.12.003

PMCID:: PMC8763404

Abstract Article PDF–7.4M

Select item 84436508.

Porphyromonas gingivalis induces entero-hepatic metabolic derangements with alteration of gut microbiota in a type 2 diabetes mouse model

Yoichiro Kashiwagi, Shunsuke Aburaya, Naoyuki Sugiyama, Yuki Narukawa, Yuta Sakamoto, Masatomo Takahashi, Hayato Uemura, Rentaro Yamashita, Shotaro Tominaga, Satoko Hayashi, Takenori Nozaki, Satoru Yamada, Yoshihiro Izumi, Atsunori Kashiwagi, Takeshi Bamba, Yasushi Ishihama, Shinya Murakami

Sci Rep. 2021; 11: 18398. Published online 2021 Sep 15. doi: 10.1038/s41598-021-97868-2

Correction in:: Sci Rep. 2021; 11: 20016.

PMCID:: PMC8443650

Abstract Article PDF–3.3M

Select item 82291779.

A New Look at the Genus Solobacterium: A Retrospective Analysis of Twenty-Seven Cases of Infection Involving S. moorei and a Review of Sequence Databases and the Literature

Corentine Alauzet, Fabien Aujoulat, Alain Lozniewski, Safa Ben Brahim, Chloé Domenjod, Cécilia Enault, Jean-Philippe Lavigne, Hélène Marchandin

Microorganisms. 2021 Jun; 9(6): 1229. Published online 2021 Jun 5. doi: 10.3390/microorganisms9061229

PMCID:: PMC8229177

Abstract Article PDF–1.1M

Select item 854489310.

An Expanded Gene Catalog of Mouse Gut Metagenomes

Jiahui Zhu, Huahui Ren, Huanzi Zhong, Xiaoping Li, Yuanqiang Zou, Mo Han, Minli Li, Lise Madsen, Karsten Kristiansen, Liang Xiao

mSphere. 2021 Jan-Feb; 6(1): e01119-20. Published online 2021 Feb 24. doi: 10.1128/mSphere.01119-20

PMCID:: PMC8544893

Abstract Article PDF–5.2M

Select item 788354511.

A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community

Susan Joseph, Joseph Aduse-Opoku, Ahmed Hashim, Eveliina Hanski, Ricarda Streich, Sarah C. L. Knowles, Amy B. Pedersen, William G. Wade, Michael A. Curtis

mSystems. 2021 Jan-Feb; 6(1): e01222-20. Published online 2021 Feb 9. doi: 10.1128/mSystems.01222-20

PMCID:: PMC7883545

Abstract Article PDF–2.5M

Select item 766025712.

Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function

Ao Li, Elisabeth Laville, Laurence Tarquis, Vincent Lombard, David Ropartz, Nicolas Terrapon, Bernard Henrissat, David Guieysse, Jeremy Esque, Julien Durand, Diego P. Morgavi, Gabrielle Potocki-Veronese

Microb Genom. 2020 Oct; 6(10): mgen000404. Published online 2020 Jul 15. doi: 10.1099/mgen.0.000404

PMCID:: PMC7660257

Abstract Article PDF–2.1M

Select item 799031613.

Amending microbiota by targeting intestinal inflammation with TNF blockade attenuates development of colorectal cancer

Ye Yang, Raad Z. Gharaibeh, Rachel C. Newsome, Christian Jobin

Nat Cancer. Author manuscript; available in PMC 2021 Mar 24.

Published in final edited form as: Nat Cancer. 2020 Jul; 1(7): 723–734. Published online 2020 Jun 22. doi: 10.1038/s43018-020-0078-7

PMCID:: PMC7990316

Abstract Article PDF–3.2M

Select item 715160714.

Single Mutation in Hammerhead Ribozyme Favors Cleavage Activity with Manganese over Magnesium

Mohammad Reza Naghdi, Emilie Boutet, Clarisse Mucha, Jonathan Ouellet, Jonathan Perreault

Noncoding RNA. 2020 Mar; 6(1): 14. Published online 2020 Mar 20. doi: 10.3390/ncrna6010014

PMCID:: PMC7151607

Abstract Article PDF–2.4M

Select item 718966115.

Using a Model of Germ-Free Animals to Study the Impact of Gut Microbiome in Research: A Step by Step Sterility Setting and Management

Odile Gabay, Jonathan Vicenty, Dylan Smith, Linda Tiffany, Jill Ascher, Tina Curry, John Dennis, Kathleen A. Clouse

Methods Protoc. 2020 Mar; 3(1): 18. Published online 2020 Feb 22. doi: 10.3390/mps3010018

PMCID:: PMC7189661

Abstract Article PDF–958K

Select item 659918416.

Microbe and host interaction in gastrointestinal homeostasis

Rachael Horne, James St. Pierre, Sufian Odeh, Michael Surette, Jane A. Foster

Psychopharmacology (Berl) 2019; 236(5): 1623–1640. Published online 2019 Mar 21. doi: 10.1007/s00213-019-05218-y

PMCID:: PMC6599184

Abstract Article PDF–1.7M

Select item 641624517.

Subchronic low-dose 2,4-D exposure changed plasma acylcarnitine levels and induced gut microbiome perturbations in mice

Pengcheng Tu, Bei Gao, Liang Chi, Yunjia Lai, Xiaoming Bian, Hongyu Ru, Kun Lu

Sci Rep. 2019; 9: 4363. Published online 2019 Mar 13. doi: 10.1038/s41598-019-40776-3

PMCID:: PMC6416245

Abstract Article PDF–2.6M

Select item 629722218.

Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis

Michael H. Schwartz, Haipeng Wang, Jessica N. Pan, Wesley C. Clark, Steven Cui, Matthew J. Eckwahl, David W. Pan, Marc Parisien, Sarah M. Owens, Brian L. Cheng, Kristina Martinez, Jinbo Xu, Eugene B. Chang, Tao Pan, A. Murat Eren

Nat Commun. 2018; 9: 5353. Published online 2018 Dec 17. doi: 10.1038/s41467-018-07675-z