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Select item 106351971.

Viral and host factors associated with SARS-CoV-2 disease severity in Georgia, USA

Ludy R. Carmola, Allison Dorothy Roebling, Dara Khosravi, Rose M. Langsjoen, Andrei Bombin, Bri Bixler, Alex Reid, Cara Chen, Ethan Wang, Yang Lu, Ziduo Zheng, Rebecca Zhang, Phuong-Vi Nguyen, Robert A. Arthur, Eric Fitts, Dalia Arafat Gulick, Dustin Higginbotham, Azmain Taz, Alaa Ahmed, John Hunter Crumpler, Colleen Kraft, Wilbur A. Lam, Ahmed Babiker, Jesse J. Waggoner, Kyle P. Openo, Laura M. Johnson, Adrianna Westbrook, Anne Piantadosi

Version 1. medRxiv. Preprint. 2023 Oct 25. doi: 10.1101/2023.10.25.23297530

PMCID:: PMC10635197

Abstract Article PDF–590K

Select item 104873862.

The Application of 3base™ Technology to Diagnose Eight of the Most Clinically Important Gastrointestinal Protozoan Infections

Mahdis Aghazadeh, Meghan Jones, Suneth Perera, Jiny Nair, Litty Tan, Brett Clark, Angela Curtis, Jackson Jones, Justin Ellem, Tom Olma, Damien Stark, John Melki, Neralie Coulston, Rohan Baker, Douglas Millar

Int J Mol Sci. 2023 Sep; 24(17): 13387. Published online 2023 Aug 29. doi: 10.3390/ijms241713387

PMCID:: PMC10487386

Abstract Article PDF–472K

Select item 99633243.

The Metagenomic Analysis of Viral Diversity in Colorado Potato Beetle Public NGS Data

Maria Starchevskaya, Ekaterina Kamanova, Yuri Vyatkin, Tatyana Tregubchak, Tatyana Bauer, Sergei Bodnev, Ulyana Rotskaya, Olga Polenogova, Vadim Kryukov, Denis Antonets

Viruses. 2023 Feb; 15(2): 395. Published online 2023 Jan 30. doi: 10.3390/v15020395

PMCID:: PMC9963324

Abstract Article PDF–2.5M

Select item 95804474.

Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease

Pavel Iša, Blanca Taboada, Rodrigo García-López, Celia Boukadida, José Ernesto Ramírez-González, Joel Armando Vázquez-Pérez, Alejandra Hernández-Terán, José Ángel Romero-Espinoza, José Esteban Muñoz-Medina, Concepción Grajales-Muñiz, Alma Rincón-Rubio, Margarita Matías-Florentino, Alejandro Sanchez-Flores, Edgar Mendieta-Condado, Gisela Barrera-Badillo, Susana López, Lucía Hernández-Rivas, Irma López-Martínez, Santiago Ávila-Ríos, Carlos F. Arias

BMC Infect Dis. 2022; 22: 792. Published online 2022 Oct 19. doi: 10.1186/s12879-022-07783-8

PMCID:: PMC9580447

Abstract Article PDF–1.5M

Select item 94454445.

Inactivation of two SARS-CoV-2 virus surrogates by electron beam irradiation on large yellow croaker slices and their packaging surfaces

Zonghong Luo, Ke Ni, Yuancheng Zhou, Guanhong Chang, Jiangtao Yu, Chunling Zhang, Wenqi Yin, Dishi Chen, Shuwei Li, Shengyao Kuang, Peng Zhang, Kui Li, Junqing Bai, Xin Wang

Food Control. 2023 Feb; 144: 109340. Published online 2022 Sep 6. doi: 10.1016/j.foodcont.2022.109340

PMCID:: PMC9445444

Abstract Article PDF–7.9M

Select item 95052116.

Biomolecular Mechanisms of Autoimmune Diseases and Their Relationship with the Resident Microbiota: Friend or Foe?

Skender Topi, Lucrezia Bottalico, Ioannis Alexandros Charitos, Marica Colella, Marina Di Domenico, Raffaele Palmirotta, Luigi Santacroce

Pathophysiology. 2022 Sep; 29(3): 507–536. Published online 2022 Sep 1. doi: 10.3390/pathophysiology29030041

PMCID:: PMC9505211

Abstract Article PDF–5.4M

Select item 92831217.

Metagenomic Investigation of Ticks From Kenyan Wildlife Reveals Diverse Microbial Pathogens and New Country Pathogen Records

Koray Ergunay, Mathew Mutinda, Brian Bourke, Silvia A. Justi, Laura Caicedo-Quiroga, Joseph Kamau, Samson Mutura, Irene Karagi Akunda, Elizabeth Cook, Francis Gakuya, Patrick Omondi, Suzan Murray, Dawn Zimmerman, Yvonne-Marie Linton

Front Microbiol. 2022; 13: 932224. Published online 2022 Jul 1. doi: 10.3389/fmicb.2022.932224

PMCID:: PMC9283121

Abstract Article PDF–4.6M

Select item 89173718.

Herpesviruses and their genetic diversity in the blood virome of healthy individuals: effect of aging

Arttu Autio, Jalmari Kettunen, Tapio Nevalainen, Bryn Kimura, Mikko Hurme

Immun Ageing. 2022; 19: 15. Published online 2022 Mar 12. doi: 10.1186/s12979-022-00268-x

PMCID:: PMC8917371

Abstract Article PDF–859K

Select item 91762659.

ICTV Virus Taxonomy Profile: Adenoviridae 2022

Mária Benkő, Koki Aoki, Niklas Arnberg, Andrew J. Davison, Marcela Echavarría, Michael Hess, Morris S. Jones, Győző L. Kaján, Adriana E. Kajon, Suresh K. Mittal, Iva I. Podgorski, Carmen San Martín, Göran Wadell, Hidemi Watanabe, Balázs Harrach, ICTV Report Consortium

J Gen Virol. 2022; 103(3): 001721. Published online 2022 Mar 9. doi: 10.1099/jgv.0.001721

PMCID:: PMC9176265

Abstract Article PDF–408K

Select item 862420410.

Clinical Application of Metagenomic Next-Generation Sequencing in Patients with Hematologic Malignancies Suffering from Sepsis

Wang-Da Liu, Ting-Yu Yen, Po-Yo Liu, Un-In Wu, Prerana Bhan, Yu-Chi Li, Chih-Hung Chi, Wang-Huei Sheng

Microorganisms. 2021 Nov; 9(11): 2309. Published online 2021 Nov 6. doi: 10.3390/microorganisms9112309

PMCID:: PMC8624204

Abstract Article PDF–780K

Select item 856888911.

Functional roles of the membrane-associated AAV protein MAAP

Lionel Galibert, Amira Hyvönen, Reetta A. E. Eriksson, Salla Mattola, Vesa Aho, Sami Salminen, Justin D. Albers, Sanna K. Peltola, Saija Weman, Tiina Nieminen, Seppo Ylä-Herttuala, Hanna P. Lesch, Maija Vihinen-Ranta, Kari J. Airenne

Sci Rep. 2021; 11: 21698. Published online 2021 Nov 4. doi: 10.1038/s41598-021-01220-7

PMCID:: PMC8568889

Abstract Article PDF–4.9M

Select item 761283412.

A prenylated dsRNA sensor protects against severe COVID-19

Arthur Wickenhagen, Elena Sugrue, Spyros Lytras, Srikeerthana Kuchi, Marko Noerenberg, Matthew L. Turnbull, Colin Loney, Vanessa Herder, Jay Allan, Innes Jarmson, Natalia Cameron-Ruiz, Margus Varjak, Rute M. Pinto, Jeffrey Y. Lee, Louisa Iselin, Natasha Palmalux, Douglas G. Stewart, Simon Swingler, Edward J. D. Greenwood, Thomas W. M. Crozier, Quan Gu, Emma L. Davies, Sara Clohisey, Bo Wang, Fabio Trindade Maranhão Costa, Monique Freire Santana, Luiz Carlos de Lima Ferreira, Lee Murphy, Angie Fawkes, Alison Meynert, Graeme Grimes, ISARIC4C Investigators, Joao Luiz Da Silva Filho, Matthias Marti, Joseph Hughes, Richard J. Stanton, Eddie C. Y. Wang, Antonia Ho, Ilan Davis, Ruth F. Jarrett, Alfredo Castello, David L. Robertson, Malcolm G. Semple, Peter J. M. Openshaw, Massimo Palmarini, Paul J. Lehner, J. Kenneth Baillie, Suzannah J. Rihn, Sam J. Wilson

Science. 2021 Oct 29; 374(6567): eabj3624. Published online 2021 Oct 29. doi: 10.1126/science.abj3624

PMCID:: PMC7612834

Abstract Article PDF–2.6M

Select item 857892913.

Susceptibility of Dog, Hamster, and Mouse Cells to the Replication-Competent Adenovirus 11p E1/E3 Green Fluorescence Protein Vector Has Implications for the Selection of Animal Vaccine Models

Madhuri Gokumakulapalle, Li Wang, Ya-Fang Mei

Front Microbiol. 2021; 12: 698999. Published online 2021 Oct 27. doi: 10.3389/fmicb.2021.698999

PMCID:: PMC8578929

Abstract Article PDF–5.1M

Select item 842840114.

Receptor Switching in Newly Evolved Adeno-associated Viruses

L. Patrick Havlik, Anshuman Das, Mario Mietzsch, Daniel K. Oh, Jonathan Ark, Robert McKenna, Mavis Agbandje-McKenna, Aravind Asokan

J Virol. 2021 Oct; 95(19): e00587-21. Prepublished online 2021 Jul 7. Published online 2021 Sep 9. doi: 10.1128/JVI.00587-21

PMCID:: PMC8428401

Abstract Article PDF–3.9M

Select item 835297315.

A new insight into aggregation of oncolytic adenovirus Ad5-delta-24-RGD during CsCl gradient ultracentrifugation

Aleksei A. Stepanenko, Anastasiia O. Sosnovtseva, Marat P. Valikhov, Vladimir P. Chekhonin

Sci Rep. 2021; 11: 16088. Published online 2021 Aug 9. doi: 10.1038/s41598-021-94573-y

PMCID:: PMC8352973

Abstract Article PDF–4.4M

Select item 830644616.

Viruses and Type 1 Diabetes: From Enteroviruses to the Virome

Sonia R. Isaacs, Dylan B. Foskett, Anna J. Maxwell, Emily J. Ward, Clare L. Faulkner, Jessica Y. X. Luo, William D. Rawlinson, Maria E. Craig, Ki Wook Kim

Microorganisms. 2021 Jul; 9(7): 1519. Published online 2021 Jul 16. doi: 10.3390/microorganisms9071519

PMCID:: PMC8306446

Abstract Article PDF–1.5M

Select item 830771117.

Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study

Maureen M. Leonard, Francesco Valitutti, Hiren Karathia, Meritxell Pujolassos, Victoria Kenyon, Brian Fanelli, Jacopo Troisi, Poorani Subramanian, Stephanie Camhi, Angelo Colucci, Gloria Serena, Salvatore Cucchiara, Chiara Maria Trovato, Basilio Malamisura, Ruggiero Francavilla, Luca Elli, Nur A. Hasan, Ali R. Zomorrodi, Rita Colwell, Alessio Fasano, The CD-GEMM Team

Proc Natl Acad Sci U S A. 2021 Jul 20; 118(29): e2020322118. Published online 2021 Jul 12. doi: 10.1073/pnas.2020322118

PMCID:: PMC8307711

Abstract Article PDF–3.0M

Select item 819623118.

Deconvoluting the T Cell Response to SARS-CoV-2: Specificity Versus Chance and Cognate Cross-Reactivity

Alexander A. Lehmann, Greg A. Kirchenbaum, Ting Zhang, Pedro A. Reche, Paul V. Lehmann

Front Immunol. 2021; 12: 635942. Published online 2021 May 28. doi: 10.3389/fimmu.2021.635942

PMCID:: PMC8196231

Abstract Article PDF–783K

Select item 827457319.

Metagenomic Sequencing and Quantitative Real-Time PCR for Fecal Pollution Assessment in an Urban Watershed

Kyle D. Brumfield, Joseph A. Cotruvo, Orin C. Shanks, Mano Sivaganesan, Jessica Hey, Nur A. Hasan, Anwar Huq, Rita R. Colwell, Menu B. Leddy

Front Water. Author manuscript; available in PMC 2022 Feb 1.

Published in final edited form as: Front Water. 2021 Feb; 3: 626849. Published online 2021 Feb 15. doi: 10.3389/frwa.2021.626849

PMCID:: PMC8274573

Abstract Article PDF–1.2M

Select item 788371420.

A systematic review of photodynamic therapy as an antiviral treatment: Potential guidance for dealing with SARS-CoV-2

Pollyanna C.V. Conrado, Karina M. Sakita, Glaucia S. Arita, Camila B. Galinari, Renato S. Gonçalves, Luciana D.G. Lopes, Maria V.C. Lonardoni, Jorge J.V. Teixeira, Patrícia S. Bonfim-Mendonça, Erika S. Kioshima

Photodiagnosis Photodyn Ther. 2021 Jun; 34: 102221. Published online 2021 Feb 15. doi: 10.1016/j.pdpdt.2021.102221

PMCID:: PMC7883714

Abstract Article PDF–3.1M

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