GEO Browser - GEO

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41 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			MTX
GSE224850	H1FOO-DD promotes efficiency and uniformity in reprogramming to naive pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	168	BED IDAT MTX TSV TXT	Akira Kunitomi	May 01, 2024
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE232078	In vitro reconstitution of epigenetic reprogramming in the human germ line	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	119	MTX TSV TXT	Yukihiro Yabuta	Apr 24, 2024
GSE262845	Antitumor progenitor exhausted CD8 T cells are sustained with TCR engagement	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	BW MTX TSV TXT	Tian Mi	Apr 05, 2024
GSE226184	The TET-Sall4-BMP regulatory axis controls craniofacial cartilage development	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio	12	BW MTX NARROWPEAK TSV TXT	Liangliang Wang	Mar 04, 2024
GSE212007	CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	36	BW MTX TSV	Lucia Daxinger	Feb 09, 2024
GSE236290	MBD2 couples DNA methylation to Transposable Elements silencing during male gametogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	146	BED BW MTX NARROWPEAK TSV TXT WIG	Shuya Wang	Jan 12, 2024
GSE197501	Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	52	CSV MTX RDS TSV TXT XLSX	Alex Chialastri	Aug 07, 2023
GSE223036	Regulation of human germline commitment by DMRT1	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	32	BIGWIG BW MTX TSV	SUN MIN LEE	Jul 17, 2023
GSE231406	IRF8 configures enhancer landscape in postnatal microglia and directs microglia specific transcriptional programs	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	72	COV MTX TAB TSV TXT	Keita Saeki	Jun 01, 2023
GSE188834	Establish a rapid and efficient chemical reprogramming platform	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	165	MTX TSV TXT	Yunkun Lu	May 03, 2023
GSE206387	YTHDF2 inhibition potentiates radiotherapy by reprogramming suppressive myeloid cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	MTX NARROWPEAK TSV TXT	Chuan He	Apr 28, 2023
GSE222726	Inducible disruption of Tet genes results in myeloid malignancy, readthrough transcription, and a heterochromatin-to-euchromatin switch	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	36	BEDGRAPH MTX TSV TXT	Isaac F. López-Moyado	Apr 17, 2023
GSE214845	Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	150	BIGWIG BW MTX NARROWPEAK RDS TSV TXT	Bernard Klaas van der Veer	Apr 12, 2023
GSE216206	Induction of fetal meiotic oocytes from embryonic stem cells in cynomolgus monkeys	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca fascicularis	47	MTX TSV TXT	Yukihiro Yabuta	Mar 17, 2023
GSE199885	Single substitution in H3.3G34 alters DNMT3A recruitment to cause progressive neurodegeneration	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	62	BW MTX TSV	Claudia L Kleinman	Mar 16, 2023
GSE224563	DNA methylation in the mouse cochlea promotes maturation of supporting cells and contributes to the failure of hair cell regeneration	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED BW COV H5 H5SEURAT MTX RDS TSV	John Duc Nguyen	Feb 07, 2023
GSE165023	Sstr2 knockout mice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BIGWIG BW MTX TSV	Byoung-Ha Yoon	Jan 04, 2023
GSE212715	Tet2 and Tet3 mediated active cytosine hydroxymethylation in Six2 progenitor cells is critical for nephron progenitor differentiation and nephron endowment	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	4	BW MTX TSV	Xiujie Liang	Nov 23, 2022
GSE206713	Laminin111-based defined culture promoting self-renewing human pluripotent stem cells with properties of the early post-implantation epiblast	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	35	MTX TSV	Michal Gropp	Nov 13, 2022