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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
5 RP11-103L11 C 5p15.3(FHCRC)
 chr5 3Mb AC092319.2 D5S675, AFM336TC1*u AQ314012.1 T7,
AQ314009.1 SP6		  
5 RP11-13H10 C 5p15.3(FHCRC)
 chr5 4Mb AC011582.4   B76053.1 T7,
B76052.1 SP6		  
5 RP11-20B3 C 5p15.3(FHCRC)
 chr5 3Mb AC026263.1, AC013664.2*u AFM205WH8, AFM205WH8*u B88669.1 SP6,
B83785.1 T7		  
5 RP11-58A5 CR 5p15.3(FHCRC)
5p15.32b(NCI)
 chr5 4Mb   D5S406, AFM154XG3, AFM154XG3*u CG734273.1 SP6,
AQ195759.1 ,
CG734274.1 T7,
BZ749161.1 T7,
AQ195765.1 		 
5 RP11-82M24 CR 5p15.3(FHCRC)
5p15.33a(NCI)
 chr5 3Mb   AFMA217YH1 BZ749188.1 SP6,
BZ749189.1 T7		  
5 RP11-89N22 C 5p15.3(FHCRC)
 chr5 4Mb     AQ286685.1 T7,
AQ286682.1*u SP6		  
5 RP11-94J21 CR 5p15.3(FHCRC)
5p15.33d(NCI)
 chr5 1Mb AC009170.6 AFMB002XC1 AQ281737.1 SP6,
AQ315935.1 T7		  
5 RP11-35K22 CR 5p15.2~15.3(FHCRC)
5p15.32b~15.32a(NCI)
 chr5 5Mb   AFMB355WB1 CG734275.1 SP6,
AQ047185.1 ,
CG734276.1 T7,
BZ749129.1 T7,
AQ047187.1 		 
5 RP11-46O23 CR 5p15.2~15.3(FHCRC)
5p15.31b(NCI)
 chr5 7Mb   D5S676, AFM347YG9*u BZ749135.1 SP6,
AQ199749.1 ,
BZ749136.1 T7		  
5 RP11-79L17 C 5p15.2~15.3(FHCRC)
 chr5 11Mb     AQ285004.1 T7,
AQ285001.1 SP6		  
5 RP11-91E7 C 5p15.2~15.3(FHCRC)
 chr5 9Mb     AQ281300.1 T7,
AQ286380.1 SP6		  
5 RP11-72C10 CR 5p15.2(FHCRC)
5p15.31a(NCI)
 chr5 10Mb   AFM255XB9, AFM255XB9*u BZ749180.1 SP6,
CG734281.1 SP6,
AQ267115.1 SP6,
CG734282.1*u T7		  
5 RP11-145B1 CR 5p15.2(FHCRC)
5p15.2d~15.2c(NCI)
 chr5 10Mb   AFM042XA11 AQ373835.1 SP6,
AQ373841.1 T7		  
5 RP11-1C1 C 5p15.2(FHCRC)
 chr5 10Mb AC011135.3,
AC092336.2		 Z39541 AQ311597.1 SP6,
B48319.1 T7		  
5 RP11-260E18 C 5p15.2(FHCRC)
 chr5 16Mb AC024588.4 D5S416, AFM205WH10*u AQ486951.1 T7,
AQ486949.1 SP6		  
5 RP11-29N3 CR 5p15.2(FHCRC)
5p15.2d(NCI)
 chr5 11Mb   D5S1987 BZ749123.1 T7,
BZ749122.1 SP6		  
5 RP11-36H5 C 5p15.2(FHCRC)
 chr5 6Mb   AFM276YB9, AFM276YB9*u AQ047070.1 T7  
5 RP11-5N8 CR 5p15.2(FHCRC)
5p15.2a(NCI)
 chr5 14Mb   AFMA282WA5 B69658.1 T7,
B48185.1 T7,
AZ517022.1 SP6		  
5 RP11-79G1 C 5p15.2(FHCRC)
 chr5 11Mb     AQ317538.1 SP6,
AZ520725.1 SP6,
AQ282552.1 SP6,
AQ282556.1 T7		  
5 RP11-81J15 C 5p15.2(FHCRC)
 chr5 17Mb     AZ521628.1 SP6,
AQ281694.1 SP6,
AZ516031.1 T7,
AQ281790.1 T7		  
5 RP11-89M18 C 5p15.2(FHCRC)
 chr5 18Mb     AQ283512.1 T7,
AZ517681.1 SP6,
AQ283421.1 SP6		  
5 RP11-91M12 C 5p15.2(FHCRC)
 chr5 9Mb     AQ282709.1 T7,
AQ282706.1 SP6		  
5 RP11-91M19 C 5p15.2(FHCRC)
 chr5 8Mb     AQ282292.1 T7,
AQ282289.1 SP6		  
5 RP11-261B20 CR 5p15.1c(NCI)
5p15.2(FHCRC)
 chr5 15Mb   D5S1954 BZ749111.1 SP6,
AQ486902.1 T7,
BZ749112.1 T7		  
5 RP11-269O14 CR 5p15.1a(NCI)
5p15.2(FHCRC)
 chr5 16Mb   AFMA140VD1 BZ749115.1 SP6,
BZ749116.1 T7		  
5 RP11-90B23 C 5p15.1~15.2(FHCRC)
 chr5 16Mb     AZ518384.1 T7,
AQ283571.1 T7,
AQ283568.1 SP6		  
5 RP11-91D3 C 5p14.3~15.2(FHCRC)
       AFMB354WC5*u AZ518768.1*u T7  
5 RP11-135M13 C 5p14.3~15.1(FHCRC)
 chr5 15Mb   D5S1989 AQ379651.1 T7,
AQ379648.1 SP6		  
5 RP11-88L18 CR 5p14.3~15.1(FHCRC)
5p15.1a~14.3e(NCI)
 chr5 17Mb   AFM105XG1 AZ516846.1 T7,
AQ281510.1 T7,
AQ281504.1 SP6		  
5 RP11-79E13 C 5p14.3(FHCRC)
 chr5 20Mb     AZ520713.1 SP6,
AQ282495.1 SP6,
AQ282509.1 T7		  
5 RP11-81B23 C 5p14.3(FHCRC)
 chr5 18Mb AC114981.2   AZ521516.1 SP6,
AQ280997.1 SP6,
AZ521518.1 T7,
AQ281000.1 T7		  
5 RP11-81P9 C 5p14.3(FHCRC)
 chr5 14Mb     AQ282046.1 T7,
AQ282045.1 SP6		  
5 RP11-91A5 C 5p14.3(FHCRC)
 chr5 19Mb     AQ286296.1 SP6,
AQ286298.1 T7		  
5 RP11-91E20 C 5p14~14.2(FHCRC)
 chr5 24Mb     AQ285530.1 SP6,
AQ285533.1 T7		  
5 RP11-477P11 S 5p14.1~14.3(SC)
 chr5 24Mb     AQ636471.1 SP6  
5 RP11-79I8 C 5p14(FHCRC)
 chr5 20Mb     AQ283107.1 T7,
AZ519177.1 SP6,
AQ283104.1 SP6,
AQ581407.1 SP6		  
5 RP11-80D4 C 5p14(FHCRC)
 chr5 22Mb     AQ283959.1 SP6,
AQ283960.1 T7		  
5 RP11-88H16 C 5p14(FHCRC)
 chr5 23Mb     AZ516251.1 T7,
AQ286809.1 T7,
AQ286806.1 SP6,
AZ516248.1*u SP6		  
5 RP11-90E15 C 5p14(FHCRC)
 chr5 25Mb     AQ281523.1 SP6,
AQ281526.1 T7		  
5 RP11-90G17 C 5p14(FHCRC)
 chr5 25Mb     AQ286892.1 T7,
AQ286889.1 SP6		  
5 RP11-91I13 5p14(FHCRC)
 chr5 88Mb AC122721.2   AQ281457.1 SP6,
AQ281461.1 T7		  
5 RP11-91L13 C 5p14(FHCRC)
 chr5 24Mb     AQ284154.1 T7,
AQ284151.1 SP6		  
5 RP11-5N11 CR 5p13.3~14(FHCRC)
5p13.3d(NCI)
 chr5 31Mb AC022447.6 AFMA238ZA9 CG734283.1 SP6,
B49300.1 SP6,
CG734284.1 T7,
BZ749167.1 SP6		  
5 RP11-422J14 C 5p13~14(FHCRC)
 chr5 32Mb AC022444.7 SGC34914 BH634728.1 SP6,
AQ547511.1 SP6,
AQ547512.1 T7,
BH634727.1 T7		  
5 RP11-67P13 C 5p13~14(FHCRC)
 chr5 32Mb   AFMA297WA5 AQ203105.1 ,
AQ203092.1 		 
5 RP11-61K20 R 5p14.3c(NCI)
 chr5 20Mb AC012095.14,
AC093303.2		   AQ194278.1 ,
AQ194276.1 		 
5 RP11-116O11 R 5p14.2a(NCI)
 chr5 24Mb AC027469.2,
AC091885.2		   AQ348841.1 SP6,
AQ348842.1 T7		  
5 RP11-91E14 C 5p14.2(FHCRC)
 chr5 23Mb     AQ284445.1 SP6,
AQ284448.1 T7		  
5 RP11-88P8 5p14.1(FHCRC)
 chr5 26Mb     AQ286891.1 SP6,
AZ516920.1 T7,
AZ516918.1*u SP6		  
5 RP11-46C20 R 5p14.1c(NCI)
 chr5 27Mb AC093533.2   AQ199902.1 ,
AQ199898.1 		 
5 RP11-138C1 C 5p13(FHCRC)
 chr5 39Mb AC025471.6 N64862 AQ382818.1 T7,
AQ382814.1 SP6		  
5 RP11-60A21 C 5p13(FHCRC)
 chr5 38Mb AC090076.1 N67017 AQ200892.1 ,
AQ200886.1 		 
5 RP11-67N10 C 5p13(FHCRC)
 chr5 35Mb   AFM063YB6, AFM063YB6*u AQ199077.1 ,
AZ519016.1 T7,
AQ199079.1 		 
5 RP11-85N3 CR 5p13(FHCRC)
5p13.2d(NCI)
 chr5 35Mb AC112486.2, AC068818.2*u AFM063YB6, AFM063YB6*u CG734285.1 SP6,
BZ749190.1 SP6,
CG734286.1 T7,
AQ282986.1 T7		  
5 RP11-90P7 C 5p13(FHCRC)
 chr5 37Mb     AQ285226.1 SP6,
AZ518663.1 T7,
AQ285229.1 T7		  
5 RP11-94E6 CR 5p13(FHCRC)
5p13.3b(NCI)
 chr5 33Mb   D5S2062 AQ314396.1 T7,
AQ314394.1 SP6		  
5 RP11-19F12 CR 5p12~13(FHCRC)
5p13.1b(NCI)
 chr5 41Mb AC016271.2*u AFM276VB1, D5S420, AFM207YG5, AFM329YB9*u, AFM276VB1*u, AFM042XA11*u B92191.1 SP6,
B82983.1 T7		  
5 RP11-44D11 C 5p12~13(FHCRC)
 chr5 39Mb AC015575.5   AQ198821.1 ,
AQ198822.1 		 
5 RP11-253B9 CR 5p13.2(FHCRC)
5p13.2c~13.2b(NCI)
 chr5 37Mb   AFM155XH12 CG734287.1 SP6,
BZ749107.1 SP6,
CG734288.1 T7		  
5 RP11-79C6 C 5p13.2(FHCRC)
 chr5 35Mb AC112204.2   AQ282434.1 SP6,
AZ519145.1 SP6,
AQ581272.1 SP6,
AQ282436.1 T7,
AQ628788.1 T7		  
5 RP11-8C23 C 5p13.2(FHCRC)
 chr5 34Mb AC107616.3, AC011042.3*u AFM238WE11, AFM238WE11*u B72299.1 SP6,
B72300.1 T7		  
5 CTD-2273H24 R 5p12(UCSF)
 chr5 38Mb   AFMA274WC9, stSG52528, D5S2471, stSG31367, human.LIFR AQ663659.1 T7  
5 RP11-91M6 C 5p12(FHCRC)
 chr5 40Mb     AQ282688.1 SP6,
AZ518730.1 T7,
AQ282691.1 T7		  
5 RP11-91I22 C 5p11~5q11.1(FHCRC)
 chr5 50Mb     AQ282595.1 T7,
AQ282592.1 SP6		  
5 RP11-203O23 CR 5q11.1~11.2(FHCRC)
5q11.2e(NCI)
 chr5 55Mb   AFM311YD1 AQ417179.1 SP6,
AQ417181.1*u T7		  
5 RP11-148P21 C 5q11.2(FHCRC)
 chr5 55Mb   AFM274XA5, AFM274XA5*u AQ376413.1 T7,
AQ376398.1 SP6		  
5 RP11-160F8 CR 5q11.2(FHCRC)
5q11.2c(NCI)
 chr5 53Mb AC034246.4 AFM254WF1, AFM254WF1*u AZ516879.1 SP6,
AQ377832.1 T7		  
5 RP11-17H13 CR 5q11.2(FHCRC)
5q11.2d(NCI)
 chr5 54Mb   D5S2076 CG734289.1 SP6,
CG734290.1 T7,
B88037.1 T7,
B82700.1*u T7		  
5 RP11-22L20 C 5q11.2(FHCRC)
 chr5 55Mb   AFM163XA11 B86322.1 T7,
B92236.1 SP6		  
5 RP11-47P7 C 5q11.2(FHCRC)
 chr5 56Mb   D5S491, AFM218XF12 AQ202853.1  
5 RP11-143O12 CR 5q11.2(FHCRC)
5q12.1a(NCI)
 chr5 55Mb AC021572.2 AFM274XA5, AFM274XA5*u AQ371733.1 T7,
AQ371730.1 SP6		  
5 RP11-190C5 CR 5q11.2~12(FHCRC)
5q11.2f(NCI)
 chr5 57Mb   AFM095ZB7, AFM095ZB7*u BZ749066.1 T7,
BZ749065.1 SP6		  
5 RP11-59G13 CR 5q11.2~12(FHCRC)
5q11.2h(NCI)
 chr5 57Mb   D5S2028 BZ749166.1 SP6,
CG734291.1 SP6,
CG734292.1 T7,
AQ194841.1*u 		 
5 RP11-89N5 C 5q11.2~12(FHCRC)
 chr5 62Mb     AQ284878.1 SP6,
AQ284881.1 T7,
AZ517815.1 T7		  
5 CTD-2166C3 C 5q11.2(FHCRC)
5q13.2(UCSF)
 chr5 55Mb     AQ164120.1 SP6,
AQ125268.1 T7		  
5 RP11-19I19 CR 5q11.2g~11.2h(NCI)
5q12(FHCRC)
 chr5 58Mb   D5S431 AQ003243.1 T7,
AQ003242.1 SP6		  
5 CTD-2006C10 C 5q12(FHCRC)
 chr5 64Mb     AQ775756.1 SP6,
B56146.1 SP6,
B56145.1 ,
AQ770022.1*u T7		  
5 CTD-2041D13 C 5q12(FHCRC)
 chr5 69Mb   U18423, Hs.241572*u AQ230179.1 T7,
AQ230483.1 SP6		 multiple_placements_on_genome
5 CTD-2041D13 C 5q12(FHCRC)
 chr5 70Mb   U18423, Hs.241572*u AQ230179.1 T7,
AQ230483.1 SP6		 multiple_placements_on_genome
5 RP11-15P2 CR 5q12(FHCRC)
5q12.3a(NCI)
 chr5 66Mb AC063978.3 D5S647, AFM292VE1*u B75410.1 T7,
B75409.1 SP6		  
5 RP11-174I22 CR 5q12(FHCRC)
5q12.1c(NCI)
 chr5 62Mb   D5S427, AFM238XA3*u BZ749057.1 T7,
BZ749056.1 SP6		  
5 RP11-195E2 C 5q12(FHCRC)
 chr5 70Mb AC044797.5   AQ416166.1 SP6  
5 RP11-232P16 C 5q12(FHCRC)
 chr5 66Mb AC044799.5   AQ485104.1 SP6  
5 RP11-480H11 C 5q12(FHCRC)
 chr5 65Mb AC016643.6   AQ635609.1 T7,
AQ635607.1 SP6		  
5 RP11-79C20 C 5q12(FHCRC)
 chr5 64Mb     AQ282479.1 SP6,
AQ581300.1 SP6,
AQ282559.1 T7,
AQ581301.1 T7		  
5 RP11-79C4 C 5q12(FHCRC)
 chr5 62Mb AC016646.6 D5S427, AFM238XA3*u AQ581270.1 SP6,
AZ519144.1 SP6,
AQ282430.1 SP6,
AQ581271.1 T7,
AQ282432.1 T7		  
5 RP11-88D8 5q12(FHCRC)
 chr5 63Mb     AQ286641.1 SP6,
AQ286642.1 T7		  
5 RP11-91C10 C 5q12(FHCRC)
 chr5 67Mb     AQ283743.1 T7,
AQ283741.1 SP6		  
5 RP11-91E18 C 5q12(FHCRC)
 chr5 73Mb     AQ284457.1 SP6,
AQ285527.1 T7		  
5 RP11-40N8 CR 5q12(FHCRC)
5q13.1c(NCI)
 chr5 67Mb   D5S2046 CG734294.1 T7,
CG734293.1 SP6,
BZ749131.1 SP6		  
5 RP11-206N2 C 5q12~13(FHCRC)
 chr5 76Mb AC068682.3,
AC114962.2		   AQ422147.1 SP6  
5 RP11-97L2 C 5q12~13(FHCRC)
 chr5 73Mb AC041042.4 H72122 AQ320791.1 T7,
AQ320790.1 SP6		  
5 RP11-142O7 C 5q13(FHCRC)
 chr16 8Mb   SHGC-701 AQ389850.1 T7,
AQ389848.1 SP6		  
5 RP11-456A17 C 5q13(FHCRC)
 chr5 78Mb AC069033.2   AQ582585.1*u T7  
5 RP11-62D9 CR 5q13(FHCRC)
5q13.3c(NCI)
 chr5 76Mb   D5S1977 CG734297.1 SP6,
AQ194008.1 ,
CG734298.1 T7		  
5 RP11-79I10 C 5q13(FHCRC)
 chr5 80Mb     AQ283110.1 SP6,
AQ283113.1*d T7,
AQ629637.1*d T7		 multiple_placements_on_genome
5 RP11-79I10 C 5q13(FHCRC)
 chr3 6Mb     AQ629637.1 T7,
AQ283113.1 T7,
AQ283110.1*d SP6		 multiple_placements_on_genome
5 RP11-79I10 C 5q13(FHCRC)
 chrY 57Mb     AQ283113.1 T7,
AQ629637.1 T7,
AQ283110.1*d SP6		 multiple_placements_on_genome
5 RP11-91M11 C 5q13(FHCRC)
 chr5 73Mb     AQ286863.1 SP6,
AQ286867.1 T7		  
5 RP11-951K18 C 5q13(FHCRC)
 chr5 68Mb AC145153.1*u   AQ724069.1 SP6,
AQ723991.1 T7		  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
5 RP11-1E10 CR 5q13(FHCRC)
5q14.1d(NCI)
 chr5 78Mb   AFM324WH1 BZ749083.1 SP6,
BZ749084.1 T7		  
5 RP11-47N20 CR 5q13~14(FHCRC)
5q14.2c(NCI)
 chr5 81Mb   D5S2029 AQ194964.1 ,
BZ749138.1 T7,
BZ749137.1 SP6		  
5 RP11-91I17 C 5q13~14(FHCRC)
 chr5 77Mb     AQ281473.1 T7,
AQ281470.1 SP6		  
5 CTD-2014G23 R 5q13.2(UCSF)
 chr5 68Mb AC109996.3 UTR-04815 AQ304906.1*u SP6  
5 CTD-2190F24 R 5q13.2(UCSF)
 chr5 68Mb     AQ777762.1 SP6,
AQ773994.1 T7		  
5 RP11-88J2 C 5q13.2(FHCRC)
 chr5 70Mb     AQ280957.1 T7,
AQ280955.1 SP6,
AZ516260.1 SP6		  
5 RP11-172K14 CR 5q13.2(FHCRC)
5q13.3b(NCI)
 chr5 74Mb   AFMA348WD1 CG734295.1 SP6,
BZ749053.1 SP6,
CG734296.1 T7,
AQ414408.1*u SP6		  
5 RP11-1H14 CR 5q13.2(FHCRC)
5q14.1a~14.1c(NCI)
 chr5 77Mb AC015454.3 AFM290VF5*u B63223.1 T7,
B48373.1 SP6		  
5 RP11-81H9 C 5q14.1(FHCRC)
 chr5 81Mb AC106824.2 D5S2029 AZ521594.1 SP6,
AQ281608.1 SP6,
AZ521596.1 T7,
AQ281612.1 T7		  
5 RP11-207B2 CR 5q14.1(FHCRC)
5q14.1e~14.2a(NCI)
 chr5 81Mb   D5S620, AFM200WA5*u BZ749088.1 T7,
BZ749087.1 SP6		  
5 RP11-275E14 CR 5q14.1(FHCRC)
5q14.3a(NCI)
 chr5 82Mb   D5S1948 AQ509086.1 SP6,
CG734277.1 SP6,
CG734278.1 T7,
BZ749118.1 T7		  
5 RP11-135F5 CR 5q14(FHCRC)
5q14.3e(NCI)
 chr5 85Mb   D5S617, AFM190XC11 AQ380700.1 SP6,
AQ380704.1*u T7		  
5 RP11-80D2 C 5q14(FHCRC)
 chr5 87Mb     AQ283274.1 SP6  
5 RP11-88D22 CR 5q14(FHCRC)
5q14.3h(NCI)
 chr5 91Mb     AZ516161.1 T7,
AQ286674.1 T7,
AZ516158.1 SP6,
AQ286672.1 SP6		  
5 RP11-90A9 C 5q14(FHCRC)
 chr5 79Mb     AQ286808.1 T7,
AQ286805.1 SP6		  
5 RP11-45O11 CR 5q14~15(FHCRC)
 chr2 160Mb AC016264.3*u AFM198WG9*d, AFM198WG9*u AQ200228.1 ,
AQ200227.1 ,
CL423179.1*d SP6,
CL423185.1*d T7		 multiple_placements_on_genome
5 RP11-45O11 CR 5q14~15(FHCRC)
 chr5 89Mb AC016264.3*u AFM198WG9, AFM198WG9*u CL423179.1 SP6,
CL423185.1 T7,
AQ200227.1*d ,
AQ200228.1*d 		multiple_placements_on_genome
5 RP11-258M21 R 5q14.3d(NCI)
 chr5 85Mb   D5S428, AFM238XF4, AFM238XF4*u AQ483737.1 T7,
AQ483734.1 SP6		  
5 RP11-114K6 C 5q15(FHCRC)
 chr5 94Mb AC011205.3   AQ346478.1 SP6,
AQ346480.1 T7		  
5 RP11-204D12 CR 5q15~21(FHCRC)
5q15d(NCI)
 chr5 95Mb   AFM302YG5, AFM302YG5*u BZ749085.1 SP6,
BZ749086.1 T7		  
5 RP11-58M12 C 5q15~21(FHCRC)
 chr5 98Mb AC021449.3,
AC092372.3		 WI-13675 AQ199227.1 ,
AQ199226.1 		 
5 RP11-90M19 C 5q15~21(FHCRC)
 chr5 97Mb     AQ284399.1 T7,
AQ284394.1 SP6		  
5 CTD-2124C13 R 5q21(UCSF)
 chr5 112Mb     AQ701097.1 T7  
5 RP11-115L24 CR 5q21(FHCRC)
5q21.2b(NCI)
 chr5 103Mb AC009815.2 D5S505, AFM268VB1*u AQ348042.1 T7,
AQ348041.1 SP6		  
5 RP11-18K11 C 5q21(FHCRC)
 chr9 34Mb AC013784.2*u SHGC-37670 B88116.1 SP6,
B88117.1 T7		  
5 RP11-203J7 CR 5q21(FHCRC)
5q21.1c(NCI)
 chr5 102Mb   AFM184YB6, AFM184YB6*u AQ419291.1 SP6,
AQ419293.1 T7		  
5 RP11-252I13 CR 5q21(FHCRC)
5q21.3d(NCI)
 chr5 106Mb AC024587.5 D5S475 AQ481343.1 T7,
AQ481330.1 SP6		  
5 RP11-277N18 C 5q21(FHCRC)
 chr5 106Mb   D5S2084 AQ505668.1 SP6,
AQ505669.1 T7		  
5 RP11-89C2 C 5q21(FHCRC)
 chr5 100Mb     AQ281699.1 T7,
AQ281698.1 SP6		  
5 RP11-89L24 C 5q21(FHCRC)
 chr5 111Mb   D5S1965 AQ318513.1 T7  
5 RP11-90J17 C 5q21(FHCRC)
 chr5 101Mb     AQ284371.1 SP6,
AZ518541.1 T7,
AQ284373.1 T7		  
5 RP11-13O21 CR 5q21~22(FHCRC)
5q22.2a~22.2b(NCI)
 chr5 111Mb   D5S1965 AZ521184.1 SP6,
B73296.1 T7		  
5 RP11-89F5 C 5q21~22(FHCRC)
 chr5 105Mb     AQ283822.1 SP6,
AQ283823.1 T7		  
5 RP11-88L14 C 5q21.3~22(FHCRC)
 chr5 110Mb     AZ516842.1 T7,
AQ281495.1 T7,
AQ281492.1 SP6		  
5 RP11-88L16 C 5q21.3~22(FHCRC)
 chr5 109Mb     AZ516844.1 T7,
AQ281501.1 T7,
AQ281498.1 SP6		  
5 RP11-120B7 R 5q21.3e(NCI)
 chr5 107Mb AC133134.2   AQ350988.1 T7,
AQ350986.1*u SP6		  
5 RP11-124K18 C 5q22(FHCRC)
 chr5 112Mb     AQ342912.1 SP6,
AQ342915.1 T7		  
5 RP11-13F18 C 5q22(FHCRC)
 chr6 1Mb AC011579.5 AFM092XB7 B76036.1 T7,
B76035.1 SP6		  
5 RP11-64F17 C 5q22(FHCRC)
 chr5 112Mb   AFM210VD6 AQ237953.1 T7,
AQ237952.1 SP6		  
5 RP11-58G19 CR 5q22.3a(NCI)
5q22~23.1(FHCRC)
 chr5 113Mb   AFMC031XB5 AQ196074.1 ,
BZ749162.1 SP6,
BZ749163.1 T7,
AQ196094.1 		 
5 RP11-80B12 5q22~23.1(FHCRC)
 chr5 113Mb     AQ283243.1 T7,
AQ283241.1 SP6		  
5 RP11-164A4 C 5q22~23(FHCRC)
 chr5 112Mb AC106750.3   AQ378314.1 SP6,
AQ378316.1 T7		  
5 RP11-81C5 CR 5q22~23(FHCRC)
5q23.1a(NCI)
 chr5 115Mb   D5S2055 AQ284841.1 SP6,
AQ320568.1 T7		  
5 RP11-91G9 C 5q22~23(FHCRC)
 chr5 112Mb     AQ281366.1 SP6,
AQ281369.1 T7		  
5 RP11-15P5 CR 5q23.1(FHCRC)
5q23.1d(NCI)
 chr5 120Mb   D5S657 B75415.1 SP6,
B75416.1 T7		  
5 RP11-47L19 CR 5q23.1(FHCRC)
5q23.1e(NCI)
 chr5 121Mb   D5S467, AFM127XD10 AQ200802.1 ,
CG734302.1 T7,
CG734301.1 SP6,
AQ200798.1 		 
5 RP11-73N22 CR 5q23.1(FHCRC)
5q23.1b(NCI)
 chr5 116Mb   AFM220YG5 CG734300.1 T7,
CG734299.1 SP6,
BZ749181.1 SP6		  
5 RP11-90A15 C 5q23.1(FHCRC)
 chr5 117Mb     AQ281390.1 T7,
AQ286821.1 SP6		  
5 CTD-2025J21 R 5q23(UCSF)
 chr5 132Mb AC074127.2 WI-14977 AQ892483.1*u SP6  
5 CTD-2068D11 R 5q23(UCSF)
 chr5 133Mb     AQ558336.1 T7,
AQ568840.1*u SP6		  
5 CTD-2217M3 R 5q23(UCSF)
 chr5 132Mb   WI-14977 AQ301575.1 T7  
5 RP11-209F21 CR 5q23(FHCRC)
5q23.2c(NCI)
 chr5 124Mb   AFMC006XF9 BZ749090.1 T7,
BZ749089.1 SP6		  
5 RP11-265M23 CR 5q23(FHCRC)
5q23.2a(NCI)
 chr5 122Mb   AFM205ZD4, D5S622 AQ489975.1 T7,
AQ489974.1 SP6		  
5 RP11-42M12 CR 5q23(FHCRC)
5q23.2f(NCI)
 chr5 127Mb   D5S649 AQ116131.1 ,
CG734304.1 T7,
CG734303.1 SP6,
BZ749132.1 SP6,
AQ046619.1 		 
5 RP11-45L19 C 5q23(FHCRC)
 chr5 128Mb   D5S642, AFM286XG9 AQ195651.1 ,
AQ195652.1 		 
5 RP11-81L1 C 5q23(FHCRC)
 chr5 122Mb   AFM205ZD4, D5S622 AQ281821.1 SP6,
AQ281823.1*u T7		  
5 RP11-90G5 C 5q23(FHCRC)
 chr5 121Mb     AQ281575.1 SP6,
AQ281578.1 T7		  
5 RP11-729C24 C 5q23~31(FHCRC)
 chr5 131Mb AC079320.9   AQ616675.1 SP6,
AQ616593.1 T7		  
5 RP11-81L23 C 5q23.3(FHCRC)
 chr5 128Mb     AZ516055.1 T7,
AZ516053.1 SP6		  
5 RP11-89P4 C 5q23.3(FHCRC)
 chr5 126Mb     AQ286701.1 T7,
AQ286699.1*u SP6		  
5 RP11-114H7 R 5q23.3c~23.3d(NCI)
 chr5 130Mb AC113367.2   AQ383557.1 T7,
AQ347386.1 SP6		  
5 RP11-772D18 R 5q23.3d~31.1a(NCI)
 chr5 131Mb AC023861.3,
AC118464.2		   AQ597086.1 SP6,
AQ497351.1*u T7		  
5 RP11-17K19 C 5q31.1(FHCRC)
 chr5 131Mb     B82756.1 T7,
B82755.1 SP6		  
5 RP11-4E3 CR 5q31.1(FHCRC)
5q31.1c(NCI)
 chr5 133Mb   AFMB354ZC9 BZ749142.1 SP6,
BZ749143.1 T7,
B48020.1 T7		  
5 RP11-89G4 C 5q31.1(FHCRC)
 chr5 131Mb AC116366.2   AQ282796.1 T7,
AQ282793.1 SP6		  
5 RP11-21C10 C 5q31.1~31.2(FHCRC)
 chr5 133Mb AC106763.2 AFM042XF8 B83103.1 SP6,
B85803.1 T7,
AQ008903.1 T7		  
5 CTA-386F6 R 5q31(CSMC)
 chr5 133Mb   AFM042XF8 B68183.1 T7,
B63083.1 T7		  
5 CTA-78C5 R 5q31(CSMC)
 chr5 133Mb   AFM042XF8 B68118.1 T7  
5 RP11-21J3 CR 5q31(FHCRC)
5q31.1e(NCI)
 chr5 134Mb   AFM066XF11, AFM066XF11*u BZ749099.1 SP6,
BZ749100.1 T7,
B84008.1 T7		  
5 RP11-233E5 CR 5q31(FHCRC)
5q31.2c(NCI)
 chr5 137Mb   AFM200YA9, AFM200YA9*u BZ749101.1 SP6,
CG734305.1 SP6,
CG734306.1 T7		  
5 RP11-461O14 C 5q31(FHCRC)
 chr5 137Mb AC113403.4   AZ521271.1 SP6,
AQ634167.1 T7		  
5 RP11-81D21 C 5q31(FHCRC)
 chr5 136Mb     AZ521546.1 SP6,
AZ521549.1 T7		  
5 RP11-48L3 C 5q31~32(FHCRC)
 chr5 141Mb AC094107.3   AQ200299.1  
5 CTD-2046K10 R 5q31.2(UCSF)
 chr5 149Mb     AQ305986.1 SP6,
AQ231558.1 T7		  
5 CTD-2090L24 C 5q31.2(FHCRC)
 chr5 135Mb   Hs.118787 AQ559100.1*u SP6  
5 CTD-2244G9 R 5q31.2(UCSF)
 chr5 148Mb     AQ192312.1 SP6,
AQ146822.1 T7		  
5 CTD-2257K21 R 5q31.2(UCSF)
         AQ760635.1*u T7  
5 RP11-678N8 C 5q31.2(FHCRC)
 chr5 138Mb AC026291.2   AQ518382.1 SP6  
5 CTD-2202A14 C 5q31.2(UCSF)
5q32(FHCRC)
 chr5 149Mb     AQ736060.1 SP6  
5 RP11-55M16 CR 5q31.3(FHCRC)
 chr5 179Mb   AFMA217XD1*d BZ749155.1 T7,
BZ749154.1 SP6,
AQ082942.1*d ,
AQ082943.1*d 		multiple_placements_on_genome
5 RP11-55M16 CR 5q31.3(FHCRC)
 chr5 141Mb   AFMA217XD1 AQ082942.1 ,
AQ082943.1 ,
BZ749154.1*d SP6,
BZ749155.1*d T7		 multiple_placements_on_genome
5 RP11-79K4 C 5q31.3(FHCRC)
 chr5 140Mb     AQ283156.1 T7,
AQ629650.1 T7,
AQ283155.1 SP6,
AQ581441.1 SP6,
AZ519181.1*u SP6		  
5 RP11-115I4 CR 5q31.3~32(FHCRC)
5q31.3c(NCI)
 chr5 139Mb   AFMA102ZF1 AQ345468.1 SP6,
AQ345482.1 T7		  
5 RP11-14K13 CR 5q31.3~32(FHCRC)
5q31.3e(NCI)
 chr5 141Mb   AFMB074XG1 B76290.1 T7,
B76289.1 SP6		  
5 RP11-15J20 CR 5q31.3d~31.3e(NCI)
5q32(FHCRC)
 chr5 140Mb     B76502.1 T7,
B76501.1 SP6		  
5 CTD-2104N20 5q32(FHCRC)
 chr5 150Mb     AQ601919.1 SP6,
AQ567075.1 T7		  
5 RP11-124B12 C 5q32(FHCRC)
 chr5 146Mb AC021201.3   AQ344288.1 SP6,
AQ344292.1 T7		  
5 RP11-19C10 CR 5q32(FHCRC)
5q32d~32e(NCI)
 chr5 147Mb   AFMA052TH5 BZ749079.1 T7,
BZ749078.1 SP6		  
5 RP11-44B19 C 5q32(FHCRC)
 chr5 148Mb AC116312.2 AFM198ZH6 AQ203068.1 ,
AQ203066.1 		 
5 RP11-79I6 C 5q32(FHCRC)
 chr5 150Mb     AZ519176.1 SP6,
AQ581405.1 SP6,
AQ283098.1 SP6,
AQ283101.1 T7,
AQ629636.1 T7		  
5 RP11-79I9 C 5q32(FHCRC)
 chr5 144Mb     AZ519048.1 SP6,
AQ317544.1 SP6,
AQ283705.1 T7		  
5 RP11-88H2 C 5q32(FHCRC)
 chr5 146Mb     AQ286754.1 SP6,
AQ286757.1 T7		  
5 RP11-89F1 C 5q32(FHCRC)
 chr5 147Mb     AQ283819.1 T7,
AQ283798.1 SP6		  
5 RP11-109G16 CR 5q32(FHCRC)
5q33.1a(NCI)
 chr5 147Mb   AFMA052TH5, AFM276WD5, AFM276WD5*u BZ749027.1 SP6,
CG734307.1 SP6,
CG734308.1 T7		  
5 RP11-128C13 CR 5q32~33(FHCRC)
5q33.1d(NCI)
 chr5 149Mb   AFM144ZH4, AFM144ZH4*u CG734310.1 T7,
CG734309.1 SP6,
BZ749031.1 SP6		  
5 RP11-54C4 C 5q32~33(FHCRC)
 chr5 151Mb AC091982.3 AA449834 AQ082723.1 ,
AQ082725.1 T7		  
5 CTD-2118L22 C 5q32~33(FHCRC)
5q34(UCSF)
 chr5 151Mb     AQ567707.1 T7  
5 RP11-109B15 C 5q33(FHCRC)
 chr5 151Mb   AFM329TF5 AQ322002.1 T7,
AQ350073.1 SP6		  
5 RP11-170L13 CR 5q33(FHCRC)
5q33.2c(NCI)
 chr5 155Mb AC114959.2 AFM311VF9 AQ412570.1 SP6,
AQ412573.1 T7		  
5 RP11-86C20 CR 5q33(FHCRC)
5q33.2b(NCI)
 chr5 152Mb AC091991.2 AFM191XD8, AFM191XD8*u BZ749192.1 T7,
BZ749191.1 SP6		  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
5 RP11-91G17 C 5q33(FHCRC)
 chr5 153Mb     AQ281399.1 T7,
AQ281397.1 SP6		  
5 RP11-134N14 C 5q33~34(FHCRC)
 chr5 157Mb   AFMC008ZF9 AQ379038.1 T7,
AQ379036.1 SP6		  
5 RP11-4J6 C 5q33~34(FHCRC)
 chr5 158Mb   AFM198WE11, AFM198WE11*u B48063.1 T7  
5 RP11-82E8 CR 5q33.3c(NCI)
5q33~34(FHCRC)
 chr5 157Mb   AFMB343XE9 CG734312.1 T7,
CG734311.1 SP6		  
5 RP11-47O12 C 5q33.2(FHCRC)
 chr5 156Mb   AFMA083XB9 AQ199694.1  
5 RP11-31B18 CR 5q33.2(FHCRC)
5q33.3a(NCI)
 chr5 155Mb   AFM210VG3, AFM210VG3*u BZ749126.1 SP6,
AQ046067.1 ,
BZ749127.1 T7,
AQ046068.1 		 
5 CTD-2262N19 R 5q34(UCSF)
 chr5 176Mb     AQ219590.1 SP6,
AQ220237.1 T7		  
5 CTD-2272E5 R 5q34(UCSF)
 chr5 174Mb     AQ745728.1 T7  
5 RP11-13H20 CR 5q34(FHCRC)
5q34f(NCI)
 chr5 164Mb   AFM214ZA9, AFMB317YD9 B76068.1 SP6,
B76069.1 T7		  
5 RP11-173F9 C 5q34(FHCRC)
 chr5 164Mb   AFM214ZA9, AFMB317YD9 AQ416442.1 SP6  
5 RP11-62G13 C 5q34(FHCRC)
 chr5 160Mb   D5S1955, D5S2118 AQ198720.1 ,
AQ198724.1 		 
5 RP11-88J19 CR 5q34(FHCRC)
5q34c(NCI)
 chr5 162Mb   AFM211YC7, D5S422 BZ749198.1 T7,
BZ749197.1 SP6		  
5 RP11-89J5 C 5q34(FHCRC)
 chr5 167Mb     AQ284749.1 T7,
AZ517785.1 T7,
AQ284747.1 SP6		  
5 RP11-89P1 C 5q34(FHCRC)
 chr5 160Mb     AZ517835.1 T7,
AQ284955.1 SP6		  
5 RP11-90C21 C 5q34(FHCRC)
 chr5 165Mb     AQ281472.1 SP6,
AQ281482.1 T7		  
5 RP11-90N23 CR 5q34(FHCRC)
5q34a~34b(NCI)
 chr5 159Mb   D5S403, AFM136XD2 CG734313.1 T7,
AZ518644.1 T7,
AQ285212.1 T7		  
5 RP11-94L2 C 5q34(FHCRC)
 chr5 163Mb   AFMC033XH1 AQ323703.1 SP6,
AQ323705.1 T7		  
5 RP11-14K9 CR 5q34~35(FHCRC)
5q35.1a(NCI)
 chr5 168Mb   D5S400, AFM112YB6 B75253.1 T7,
B75252.1 SP6		  
5 RP11-15F10 CR 5q34~35(FHCRC)
5q35.1c(NCI)
 chr5 169Mb   AFM265VG5, AFM265VG5*u B76408.1 SP6,
B76409.1 T7		  
5 RP11-182E4 CR 5q34~35(FHCRC)
5q35.1d(NCI)
 chr5 170Mb   AFM210VF12 BZ749061.1 SP6,
BZ749062.1 T7		  
5 RP11-252I14 CR 5q34~35(FHCRC)
5q35.3g(NCI)
 chr5 179Mb AC104115.3   AZ517447.1 SP6,
AQ491787.1 T7		  
5 CTD-2129M9 C 5q35(FHCRC)
 chr5 172Mb     AQ602893.1 T7,
AQ712303.1 SP6		  
5 CTD-2275B3 C 5q35(UCSF)
         AQ680334.1*u SP6  
5 RP11-105L4 C 5q35(FHCRC)
 chr5 172Mb   AFM302WC9, AFM350XH1, AFM350XH1*u AQ319732.1 T7,
AQ319729.1 SP6		  
5 RP11-117L6 C 5q35(FHCRC)
 chr5 170Mb AC093246.3   AQ350516.1 T7,
AQ350512.1 SP6		  
5 RP11-125L2 CR 5q35(FHCRC)
5q35.2b(NCI)
 chr5 173Mb   AFMC005WG1 AQ344954.1 SP6,
AQ344955.1 T7		  
5 RP11-281O15 C 5q35(FHCRC)
 chr5 178Mb AC025845.2,
AC104117.2		   AQ506000.1 SP6  
5 RP11-2I16 CR 5q35(FHCRC)
5q35.3c(NCI)
 chr5 177Mb   AFMB307ZA9 B63629.1 T7,
B48559.1 SP6		  
5 RP11-354C13 C 5q35(FHCRC)
 chr5 177Mb AC113388.2   AZ517807.1 T7,
AQ530696.1 SP6		  
5 RP11-48K2 CR 5q35(FHCRC)
5q35.2a(NCI)
 chr5 172Mb   AFM350XH1, AFM350XH1*u CG734279.1 SP6,
AQ198318.1 ,
CG734280.1 T7,
BZ749139.1 T7,
AQ198320.1 		 
5 RP11-51D11 CR 5q35(FHCRC)
 chr5 141Mb   AFM323YH1*u BZ749149.1 T7,
BZ749148.1 SP6		  
5 RP11-627M5 C 5q35(FHCRC)
 chr5 176Mb AC026513.2   AQ439183.1 T7,
AQ493575.1 SP6		  
5 RP11-69A18 C 5q35(FHCRC)
 chr5 171Mb   AFM242XB10 AQ241290.1 SP6,
AQ241292.1 T7		  
5 RP11-779O18 C 5q35(FHCRC)
 chr5 172Mb AC022217.5   AQ463543.1*u T7  
5 RP11-88L12 C 5q35(FHCRC)
 chr5 172Mb   AFM057XH8 AZ516840.1 T7,
AQ281489.1 T7		  
total230C:203 R:96 S:1230227 63122230 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.