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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
21 RP11-89H16 CR 21q11.1~11.2(FHCRC)
 chr21 15Mb   AFM289YH9 AQ285917.1*u SP6,
AZ517858.1*u T7		  
21 RP11-61A21 CR 21q11.1(FHCRC)
21q21.1b(NCI)
 chr21 15Mb   AFMB356WG1 CL423316.1 SP6,
AQ237427.1 SP6,
CL423318.1 T7,
AQ199973.1 		 
21 RP11-49J9 CR 21q11.2(FHCRC)
21q21.1f(NCI)
 chr21 20Mb   AFM268XG1*u AQ053102.1 ,
CL423348.1 T7,
AQ053086.1 ,
CL423345.1 SP6		  
21 RP11-181G18 C 21q11.2~21(FHCRC)
 chr21 16Mb   SHGC-21147    
21 RP11-31B6 CR 21q11.2~21(FHCRC)
21q11.2d(NCI)
 chr21 14Mb   AFM289YH9, SHGC-34996 CL423281.1 SP6,
AQ046029.1 ,
CL423285.1 T7		  
21 RP11-15E10 C 21q21.1(FHCRC)
 chr21 18Mb   SHGC-4380 B83480.1 SP6,
B83481.1 T7		  
21 CTB-18I14 R 21q21(CSMC)
 chr21 29Mb   AFMB341WD9    
21 CTB-19J2 R 21q21(CSMC)
 chr21 29Mb   AFMB341WD9    
21 CTB-56P3 R 21q21(CSMC)
 chr21 31Mb   AFMA218WB1    
21 CTD-2035F24 C 21q21(FHCRC)
 chr21 26Mb   Hs.177486    
21 RP11-108H5 C 21q21(FHCRC)
 chr21 26Mb   SHGC-767, AFM263XF5, AFM263XF5*u AQ348670.1 SP6,
AQ319006.1 T7		  
21 RP11-13J15 C 21q21(FHCRC)
 chr21 24Mb AC011275.3 SHGC-4988 B76096.1 T7,
B83395.1 SP6,
B76095.1 SP6		  
21 RP11-143A3 C 21q21(FHCRC)
 chr21 18Mb   SHGC-2319    
21 RP11-15H6 C 21q21(FHCRC)
 chr21 26Mb AC011860.4 AFMB291YB9 B75334.1 SP6,
B75335.1 T7		  
21 RP11-44F3 C 21q21(FHCRC)
 chr21 26Mb   SHGC-5960*u AQ198856.1 ,
AQ198855.1 		 
21 RP11-53K11 C 21q21(FHCRC)
 chr21 25Mb   AFM234WA5, SHGC-40*u AQ051878.1 ,
AQ060587.1 		 
21 RP11-74D19 C 21q21(FHCRC)
 chr21 28Mb   SHGC-6883 AQ266734.1 SP6,
AQ238910.1 T7		  
21 RP11-86J21 C 21q21(FHCRC)
 chr21 22Mb   AFMA081WF1    
21 RP11-12M14 C 21q21~22.1(FHCRC)
 chr21 31Mb   AFM317TC9 B75909.1 SP6,
B75910.1 T7		  
21 RP11-191I6 C 21q21~22.1(FHCRC)
 chr21 31Mb   AFM288YG5    
21 RP11-5N20 C 21q21~22.1(FHCRC)
 chr21 31Mb   SHGC-4720 B49308.1 T7,
B49307.1 SP6		  
21 RP11-70L17 C 21q21~22.1(FHCRC)
 chr21 29Mb   SHGC-30877 AQ237532.1 SP6  
21 RP11-98K19 C 21q21~22(FHCRC)
 chr21 27Mb   AFMA043ZE5 AQ316688.1 T7,
AQ316685.1 SP6		  
21 RP11-32A2 C 21q21.2~21.3(FHCRC)
 chr21 29Mb AP000239.2 SHGC-6854    
21 RP11-6I7 C 21q21.2~21.3(FHCRC)
 chr21 26Mb   SHGC-767, AFM263XF5, AFM263XF5*u B48248.1 SP6  
21 RP11-125H1 C 21q21.3(FHCRC)
 chr21 31Mb   AFM317TC9 AQ348941.1 T7,
AZ520420.1 SP6		  
21 RP11-147H1 C 21q21.3(FHCRC)
 chr21 32Mb   AFM193XF10, AFM193XF10*u AQ373665.1 SP6  
21 RP11-276A17 C 21q21.3(FHCRC)
 chr21 31Mb   SHGC-5679, AFM288YG5    
21 RP11-30N6 C 21q21.3(FHCRC)
 chr21 29Mb   SHGC-6854, AFMB341WD9 B85241.1 T7  
21 RP11-83L17 C 21q21.3(FHCRC)
 chr21 26Mb   AFM263XF5, AFM263XF5*u    
21 RP11-89C22 C 21q21.3(FHCRC)
 chr21 25Mb   AFM234WA5 AQ282698.1 T7,
AQ282696.1 SP6,
AZ517003.1*u SP6		  
21 RP11-267O12 CR 21q21.3(FHCRC)
21q22.11a(NCI)
 chr21 31Mb   SHGC-6873, AFM317TC9 CL423216.1 T7,
CL423214.1 SP6		  
21 RP11-61G3 C 21q21.3~22.11(FHCRC)
 chr21 31Mb   SHGC-937 AQ237563.1 SP6  
21 CTA-344G6 R 21q21.3~22.1(CSMC)
 chr21 33Mb   D21S1823 B15231.1*u T7,
B17109.1*u SP6		  
21 RP11-115H17 C 21q21.3~22.1(FHCRC)
 chr21 27Mb   SHGC-11277 AQ346443.1 SP6,
AQ346445.1 T7		  
21 CTA-238D5 R 21q22.1(CSMC)
 chr21 33Mb   WI-7910, D21S1825    
21 CTB-13J18 R 21q22.1(CSMC)
 chr21 37Mb   D21S270    
21 CTB-5J19 R 21q22.1(CSMC)
 chr21 36Mb   AFM261ZG1, AFM261ZG1*u, D21S1252*u    
21 CTD-2096F11 C 21q22.1(FHCRC)
 chr21 33Mb   Hs.177559    
21 RP11-14B21 C 21q22.1(FHCRC)
 chr21 31Mb AP000245.3 SHGC-6873, AFM317TC9 B82254.1 SP6,
B87952.1 T7		  
21 RP11-17O20 CR 21q22.1(FHCRC)
21q22.12a(NCI)
 chr21 35Mb   AFMA099WC9 B82827.1 SP6,
B83690.1 T7		  
21 RP11-54F16 C 21q22.1(FHCRC)
 chr21 32Mb   AFM198TC5, SHGC-35207 AQ082134.1 T7,
AQ082133.1 		 
21 RP11-8P19 CR 21q22.1(FHCRC)
21q22.11c(NCI)
 chr21 34Mb   AFMA086YF9 B72466.1 SP6,
B72467.1 T7		  
21 CTA-403C6 R 21q22.1~22.2(CSMC)
 chr21 39Mb   WI-9128    
21 CTA-601D8 R 21q22.1~22.2(CSMC)
 chr21 37Mb   D21S1900    
21 CTA-74C2 R 21q22.1~22.2(CSMC)
 chr21 37Mb   D21S1900    
21 CTB-40N13 R 21q22.1~22.2(CSMC)
 chr21 37Mb   D21S1900    
21 CTB-40P15 R 21q22.1~22.2(CSMC)
 chr21 37Mb   D21S1900    
21 RP11-12N9 CR 21q22.13a(NCI)
21q22.2(FHCRC)
 chr21 36Mb   AFM261ZG1, AFM261ZG1*u CL423247.1 SP6,
CL423249.1 T7		  
21 RP11-78B20 CR 21q22.13b(NCI)
21q22.2(FHCRC)
 chr21 38Mb   AFM016XE5, AFM016XE5*u CL423189.1 T7,
CL423350.1 SP6		  
21 CTA-384E5 R 21q22.2(CSMC)
 chr21 38Mb   AFM283XH9    
21 CTA-635H5 R 21q22.2(CSMC)
 chr21 38Mb   AFM283XH9    
21 RP11-105O24 C 21q22.2(FHCRC)
 chr21 37Mb   D21S270 AQ348090.1 T7,
AQ324099.1 SP6		  
21 RP11-143K14 C 21q22.2(FHCRC)
 chr5 55Mb   AFM274XA5, AFM274XA5*u AQ389853.1 T7,
AQ389851.1 SP6		  
21 RP11-66C14 CR 21q22.2(FHCRC)
21q22.2a(NCI)
 chr21 38Mb   AFM283XH9, AFM283XH9*u CL423217.1 SP6,
CL423222.1 T7		  
21 RP11-96H21 C 21q22.2(FHCRC)
 chr21 30Mb   SHGC-4990 AQ314195.1 T7,
AQ314193.1 SP6		  
21 CTD-2103O7 C 21q22.2~22.3(FHCRC)
 chr21 41Mb   Hs.76391    
21 RP11-114H1 CR 21q22.2~22.3(FHCRC)
21q22.2c(NCI)
 chr21 41Mb   AFMA137YF5 AQ347382.1 SP6,
AQ383555.1 T7		  
21 RP11-120C17 CR 21q22.2~22.3(FHCRC)
21q22.3a(NCI)
 chr21 41Mb   AFMA152WD1 AQ349061.1 T7,
AQ342490.1 SP6		  
21 RP11-1P3 C 21q22.2~22.3(FHCRC)
 chr21 40Mb   AFM206ZC7 B47720.1 T7,
AQ315945.1*u SP6		  
21 CTA-340E4 R 21q22.3(CSMC)
 chr21 44Mb   AFM071XA1    
21 CTA-346E2 R 21q22.3(CSMC)
 chr1 102Mb   AFM071XA1*d, D21S1912*d B15835.1 SP6,
B15836.1 T7		 multiple_placements_on_genome
21 CTA-346E2 R 21q22.3(CSMC)
 chr21 44Mb   AFM071XA1 B15835.1*d SP6,
B15836.1*d T7		 multiple_placements_on_genome
21 RP11-16B19 C 21q22.3(FHCRC)
 chr21 44Mb AC011782.4 AA443634 B83593.1 T7,
B83592.1*u SP6		  
21 RP11-190A24 CR 21q22.3(FHCRC)
21q22.3b(NCI)
 chr21 44Mb   AFM326TF1, AFM326TF1*u CL423253.1 T7,
CL423250.1 SP6		  
total64C:48 R:29 S:06464 56440 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.