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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
21 RP11-13J15 C 21q21(FHCRC)
chr21 24Mb AC011275.3 SHGC-4988 B76096.1 T7,
B83395.1 SP6,
B76095.1 SP6
 
21 RP11-15H6 C 21q21(FHCRC)
chr21 26Mb AC011860.4 AFMB291YB9 B75334.1 SP6,
B75335.1 T7
 
21 RP11-89M24 C 21q21(FHCRC)
chr21 15Mb AC022685.2   AZ517686.1 T7  
21 RP11-49B5 R 21q21.1e(NCI)
chr21 20Mb AF238375.3   AQ052036.1 ,
AQ052035.1
 
21 RP11-32A2 C 21q21.2~21.3(FHCRC)
chr21 29Mb AP000239.2 SHGC-6854    
21 RP11-14B21 C 21q22.1(FHCRC)
chr21 31Mb AP000245.3 SHGC-6873, AFM317TC9 B82254.1 SP6,
B87952.1 T7
 
21 RP11-446L19 C 21q22.2~22.3(FHCRC)
chr21 43Mb AC020600.4      
21 RP11-16B19 C 21q22.3(FHCRC)
chr21 44Mb AC011782.4 AA443634 B83593.1 T7,
B83592.1*u SP6
 
21 RP11-549G7 C 21q22.3(FHCRC)
chr21 43Mb AC019224.3      
total9C:8 R:1 S:099 956 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.