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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
14 CTB-15J14 R 14q21 distal(CSMC)
 chr14 39Mb   D14S278    
14 RP11-84D12 C 14q11.1~11.2(FHCRC)
 chr14 20Mb   SHGC-24064    
14 RP11-324B11 R 14q11.1b(NCI)
 chr14 19Mb   WI-18729, RH53565 AZ081805.2 SP6,
AQ539031.1 SP6,
AZ081795.1*u T7		  
14 RP11-14O20 C 14q11.2(FHCRC)
 chr14 20Mb   SHGC-11728    
14 RP11-152G22 C 14q11.2(FHCRC)
 chr14 20Mb   SHGC-11531 AQ383466.1 SP6,
AQ383467.1 T7		  
14 RP11-189N14 C 14q11.2(FHCRC)
 chr14 23Mb   SHGC-32365, SHGC-31124, SHGC-11217    
14 RP11-67G19 C 14q11.2(FHCRC)
 chr14 20Mb   SHGC-10764*u AQ196254.1 ,
AQ201525.1 		 
14 RP11-68M15 C 14q11.2(FHCRC)
 chr14 22Mb   SHGC-5794 AQ237629.1 T7,
AQ237626.1 SP6		  
14 RP11-70F9 C 14q11.2(FHCRC)
 chr14 22Mb   SHGC-32250 AQ236848.1 SP6  
14 RP11-170D9 C 14q11.2~12(FHCRC)
 chr14 24Mb   SHGC-9515 AQ418003.1 T7  
14 RP11-256C2 C 14q11.2~12(FHCRC)
 chr14 23Mb   SHGC-32365, SHGC-31124, SHGC-11217, SHGC-11203    
14 RP11-332N6 R 14q11.2b(NCI)
 chr14 19Mb   RH53565 AZ081799.2 SP6,
AZ081796.1*u T7		  
14 RP11-566I2 R 14q11.2c(NCI)
 chr14 21Mb   WI-14198 AZ081804.2 SP6,
AZ081794.1*u T7		  
14 RP11-368G9 R 14q11.2g~12a(NCI)
 chr14 23Mb   stSG41912 AQ542979.1 T7,
AZ575482.1 T7,
AZ081803.2 SP6,
AQ542975.1 SP6,
AZ081917.1*u T7		  
14 RP11-303G24 R 14q12a~12b(NCI)
 chr14 25Mb   RH53533 AZ081801.2 SP6,
AZ081787.1*u T7		  
14 CTB-17D5 R 14q12(CSMC)
 chr14 32Mb   MR12214    
14 CTB-20P7 R 14q12(CSMC)
 chr14 30Mb   AFMA102ZD9    
14 CTB-44D7 R 14q12(CSMC)
 chr14 30Mb   AFMA102ZD9    
14 RP11-109D12 C 14q12(FHCRC)
 chr14 26Mb   SHGC-37332, SHGC-37332*u AQ322940.1 T7  
14 RP11-125A5 C 14q12(FHCRC)
 chr14 28Mb   SHGC-1403 AQ345961.1 SP6,
AQ345964.1 T7		  
14 RP11-2K1 C 14q12(FHCRC)
 chr14 30Mb   AFMA102ZD9 B47805.1 T7,
B47804.1 SP6		  
14 RP11-48L1 C 14q12(FHCRC)
 chr14 30Mb   SHGC-6471 AQ200297.1  
14 RP11-94D17 C 14q12(FHCRC)
 chr14 25Mb   SHGC-1411 AQ315785.1 T7,
AQ282116.1 SP6		  
14 RP11-270E10 C 14q12~13(FHCRC)
 chr14 32Mb   SHGC-37333    
14 RP11-29A7 C 14q12~13(FHCRC)
 chr14 33Mb   SHGC-7614 B84965.1 SP6  
14 RP11-37F23 C 14q12~13(FHCRC)
 chr14 31Mb   SHGC-6098 AQ029292.1 T7  
14 RP11-91K19 C 14q12~13(FHCRC)
 chr14 31Mb   SHGC-2862 AQ281561.1 SP6  
14 RP11-529E4 R 14q12c(NCI)
 chr14 27Mb   RH71202 AZ081800.2 SP6,
AZ081792.1*u T7		  
14 RP11-369O9 R 14q12d(NCI)
 chr14 29Mb   RH47598 AZ081947.2 SP6,
AZ081946.2 T7		  
14 RP11-559L22 R 14q12e(NCI)
 chr14 30Mb   A002A15, A002A15*u AZ564736.3 SP6,
AZ081813.1*u SP6,
AZ081791.1*u T7		  
14 RP11-557O15 R 14q12e~13.1a(NCI)
 chr14 32Mb   A003N09 AZ081978.2 T7,
AZ081977.2 SP6		  
14 CTB-50N2 R 14q13(CSMC)
 chr14 46Mb   AFM114XG7    
14 CTB-53P22 R 14q13(CSMC)
 chr14 33Mb   D14S70    
14 RP11-105F9 C 14q13(FHCRC)
 chr14 33Mb   SHGC-848 AQ323433.1 SP6,
AQ323435.1 T7		  
14 RP11-26M6 CR 14q13(FHCRC)
14q13.3a(NCI)
 chr14 34Mb   SHGC-2833 B84609.1 SP6,
B84610.1 T7		  
14 RP11-54H22 C 14q13(FHCRC)
 chr14 32Mb   SHGC-4864 AQ082190.1 T7,
AQ082188.1 		 
14 RP11-288G5 C 14q13~21(FHCRC)
       SHGC-6655*u    
14 RP11-465B6 R 14q13.2b(NCI)
 chr14 35Mb AL354770.16 RH28319 AZ564739.3 SP6,
AQ581027.1 SP6,
AQ581028.1 T7,
AZ081818.1*u SP6,
AZ081788.1*u T7		  
14 RP11-458A21 R 14q13.2b~13.3a(NCI)
 chr14 36Mb   RH69670 AQ582366.1 T7,
AZ081912.1*u SP6,
AZ081920.1*u T7		  
14 RP11-189H22 C 14q21.1(FHCRC)
 chr14 40Mb   SHGC-998    
14 RP11-23D3 C 14q21(FHCRC)
 chr14 39Mb   SHGC-14732 AQ013724.1 ,
AQ013723.1 		 
14 RP11-35O12 C 14q21(FHCRC)
 chr10 31Mb   SHGC-5313 AQ045202.1  
14 RP11-52O23 C 14q21(FHCRC)
 chr14 47Mb   SHGC-34775 AQ052758.1  
14 RP11-88N14 C 14q21(FHCRC)
 chr14 39Mb   SHGC-14732 AQ281565.1 SP6,
AZ516878.1 T7,
AQ281568.1 T7		  
14 CTB-40C10 R 14q21~22(CSMC)
 chr14 55Mb   AFMA061WB5    
14 CTB-40C9 R 14q21~22(CSMC)
 chr14 55Mb   AFMA061WB5    
14 RP11-137D17 C 14q21~22(FHCRC)
 chr14 51Mb   SHGC-33656 AQ381307.1 SP6,
AQ381309.1 T7		  
14 RP11-90K14 C 14q21~22(FHCRC)
 chr14 50Mb   SHGC-20859, SHGC-20858*u AQ282877.1 T7,
AQ282865.1 SP6		  
14 RP11-305B23 R 14q21.1b(NCI)
 chr14 38Mb   A003B13 AZ564740.3 SP6,
AZ081798.2 T7,
AZ081823.1*u SP6		  
14 RP11-435L2 R 14q21.1c~21.2a(NCI)
 chr14 42Mb   RH26197 AZ081810.2 T7,
AZ564742.3 SP6,
AZ081817.1*u SP6		  
14 RP11-453F20 R 14q21.2a~21.3a(NCI)
 chr14 44Mb   A009Y19, RH67673 AZ303305.2 T7,
AZ564741.3 SP6,
AQ587286.1 SP6,
AZ081812.1*u SP6		  
14 RP11-262M8 C 14q21.3(FHCRC)
 chr14 51Mb AL355833.4 SHGC-12634 AQ489792.1 SP6,
AQ489795.1 T7		  
14 RP11-94K16 C 14q21.3(FHCRC)
 chr14 48Mb   SHGC-17592 AQ314936.1 SP6,
AQ314938.1 T7		  
14 RP11-315M16 R 14q21.3c~21.3d(NCI)
 chr14 47Mb   RH53701 AZ564743.3 SP6,
AQ504627.1 SP6,
AZ081811.2 T7,
AZ520619.1 T7,
AZ081816.1*u SP6		  
14 RP11-321F3 R 14q21.3d(NCI)
 chr14 46Mb   RH44884 AZ081784.2 SP6,
AZ081781.2 T7		  
14 RP11-122A4 C 14q22(FHCRC)
 chr14 51Mb   SHGC-6184 AZ519425.1 T7,
AQ342979.1 SP6		  
14 RP11-12P7 C 14q22(FHCRC)
 chr14 53Mb AC021258.3 SHGC-37701, SHGC-37701*u B75077.1 SP6,
B75078.1 T7		  
14 RP11-172G1 C 14q22(FHCRC)
 chr14 54Mb   SHGC-15932 AQ422714.1 T7  
14 RP11-221K16 C 14q22(FHCRC)
 chr14 53Mb   SHGC-9727    
14 RP11-82A8 C 14q22(FHCRC)
 chr14 51Mb   SHGC-10365    
14 RP11-21P8 C 14q22~23(FHCRC)
 chr14 56Mb   SHGC-24389 B84087.1 SP6  
14 RP11-64I19 C 14q22~23(FHCRC)
 chr14 60Mb   SHGC-16536 AQ239281.1 SP6  
14 RP11-379K10 R 14q22.1b(NCI)
 chr14 50Mb   RH65693 AZ081809.2 T7,
AQ531520.1 T7,
AQ531159.1 SP6,
AZ081921.1*u SP6		  
14 RP11-368A1 R 14q22.1c(NCI)
 chr14 50Mb   RH26628 AZ081906.2 T7,
AQ542780.1 T7,
AZ081911.2 SP6		  
14 RP11-10P7 C 14q22.2(FHCRC)
 chr14 55Mb   SHGC-1417 B71820.1 SP6,
B71821.1 T7		  
14 RP11-312M17 R 14q22.2b(NCI)
 chr14 54Mb   A002Q45 AZ564744.3 SP6,
AZ081808.2 T7,
AZ081815.1*u SP6		  
14 RP11-571D4 R 14q22.3b(NCI)
 chr14 55Mb   N38942 AZ081807.2 T7,
AZ081913.1*u SP6		  
14 RP11-571J17 R 14q23.1a(NCI)
 chr14 57Mb   A005D15 AZ564745.3 SP6,
AZ081806.2 T7,
AZ081814.1*u SP6		  
14 RP11-105H21 C 14q23(FHCRC)
 chr14 55Mb   SHGC-8007 AQ323506.1 SP6,
AQ323509.1 T7		  
14 RP11-145O12 C 14q23(FHCRC)
 chr14 62Mb   SHGC-8471 AQ373812.1 T7,
AQ373811.1 SP6		  
14 RP11-14C21 C 14q23(FHCRC)
 chr14 63Mb   SHGC-218 B76244.1 T7,
B76243.1 SP6		  
14 RP11-156E22 C 14q23(FHCRC)
 chr14 66Mb AL139785.5 SHGC-2558    
14 RP11-206J4 C 14q23(FHCRC)
 chr14 63Mb   SHGC-11003, SHGC-24381 AQ422108.1 T7  
14 RP11-29B7 C 14q23(FHCRC)
 chr14 54Mb   SHGC-31047 B84971.1 T7  
14 RP11-2L22 C 14q23(FHCRC)
 chr14 58Mb AC012580.3 SHGC-34719 B48626.1 SP6,
B48627.1 T7		  
14 RP11-63G22 C 14q23(FHCRC)
 chr14 64Mb   SHGC-33304 AQ202708.1  
14 RP11-182D6 C 14q23~24(FHCRC)
 chr14 66Mb   SHGC-31433    
14 RP11-35D12 C 14q23~24(FHCRC)
 chr14 68Mb AC012278.3 AA424743 AQ046569.1 ,
AQ046572.1 		 
14 RP11-44K16 C 14q23~24(FHCRC)
 chr14 63Mb AC019027.4 SHGC-11003, AA633577, SHGC-24381 AQ202522.1 ,
AQ202521.1 		 
14 RP11-471N20 R 14q23.1b~23.1c(NCI)
 chr14 60Mb   stSG21195 AZ081851.2 T7,
AQ632875.1 T7,
AZ081862.2 SP6		  
14 RP11-436G5 R 14q23.1c(NCI)
 chr14 61Mb   RH16813, A005M45 AZ081955.2 SP6,
AZ081954.2 T7,
AQ554747.1*u T7		  
14 RP11-445J13 R 14q23.1c~23.2a(NCI)
 chr14 62Mb   SGC31030 AZ081834.2 SP6,
AZ081833.2 T7		  
14 RP11-305I24 R 14q23.3a(NCI)
 chr14 66Mb   RH46030 AZ081828.2 SP6,
AZ081827.2 T7		  
14 RP11-59M15 C 14q24.1(FHCRC)
 chr14 69Mb   SHGC-30384 AQ195745.1  
14 CTB-3N14 R 14q24.1~24.2(CSMC)
 chr14 68Mb   D14S1011    
14 CTB-51O21 R 14q24.1~24.2(CSMC)
 chr14 72Mb   D14S277    
14 RP11-29N19 C 14q24(FHCRC)
 chr14 76Mb   SHGC-6969*u B87632.1 SP6  
14 RP11-285P21 C 14q24~31(FHCRC)
 chr14 77Mb AC007373.2 SHGC-8892, SHGC-6465    
14 RP11-463C8 R 14q24~31(FHCRC)
 chr14 76Mb AC007375.6 RH26673 AQ634720.1 T7,
AZ521299.1 SP6		  
14 RP11-526N18 R 14q24~31(FHCRC)
 chr14 79Mb AF123462.1 RH78382    
14 RP11-448I10 R 14q24.2a(NCI)
 chr14 69Mb   A009C06, RH67094 AZ081930.2 SP6,
AZ081925.2 T7		  
14 RP11-18G18 C 14q24.2(FHCRC)
 chr14 69Mb   SHGC-1400    
14 RP11-325N20 R 14q24.2a~24.2b(NCI)
 chr14 71Mb   RH70438 AZ081938.2 SP6,
AZ081953.2 T7		  
14 RP11-72J8 C 14q24.2(FHCRC)
 chr14 69Mb   SHGC-35665 AQ266469.1 T7,
AZ519825.1 T7,
AQ266466.1 SP6		  
14 RP11-74M3 C 14q24.2(FHCRC)
 chr14 68Mb   SHGC-4685 AQ268986.1 SP6,
AQ268990.1 T7		  
14 RP11-92H20 C 14q24.2~24.3(FHCRC)
 chr14 74Mb   SHGC-13257*u AQ281138.1 SP6,
AQ320845.1 T7		  
14 RP11-435K23 R 14q24.2b(NCI)
 chr14 72Mb   RH48398 AZ081857.2 SP6,
AQ936166.1 SP6,
AQ936412.1 T7,
AZ081858.2 T7		  
14 CTB-4N19 R 14q24.3(CSMC)
 chr14 77Mb   D14S74    
14 CTB-61N24 R 14q24.3(CSMC)
 chr14 74Mb   D14S273    
14 RP11-507E23 R 14q24.3(FHCRC)
 chr14 75Mb AC007182.3 RH66923    
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
14 RP11-81O20 C 14q24.3(FHCRC)
 chr14 75Mb   SHGC-3813 AQ286798.1 T7,
AQ286795.1 SP6		  
14 RP11-46L17 C 14q24.3~31(FHCRC)
 chr14 78Mb   SHGC-1420 AQ195375.1  
14 RP11-63D17 C 14q24.3~31(FHCRC)
 chr14 77Mb AL049832.3 SHGC-6465 AQ199040.1 ,
AQ199042.1 		 
14 RP11-501I4 R 14q24.3d(NCI)
 chr14 76Mb AF111168.2 RH53682 AZ081831.1*u T7,
AZ081849.2*u SP6		  
14 CTB-10N20 R 14q31(CSMC)
 chr14 90Mb   MR13133    
14 CTB-12I3 R 14q31(CSMC)
 chr14 93Mb   MR14834    
14 CTB-7M9 R 14q31(CSMC)
 chr14 87Mb   AFMA051XF5    
14 RP11-13J10 C 14q31(FHCRC)
 chr2 104Mb AC018730.8 SHGC-817 B76088.1 T7  
14 RP11-493G17 R 14q31(FHCRC)
 chr14 76Mb AC007954.7*u RH26673    
14 CTB-47I18 R 14q31~32.1(CSMC)
 chr14 92Mb   AFMA112XC1    
14 RP11-192K24 C 14q31~32.1(FHCRC)
 chr14 90Mb   SHGC-15342*u AQ417249.1 SP6  
14 RP11-40P23 C 14q31~32(FHCRC)
 chr14 88Mb   SHGC-275    
14 RP11-475O3 R 14q31.1b(NCI)
 chr14 79Mb   RH78382 AZ081855.2 SP6,
AQ635862.1 T7,
AZ081863.2 T7		  
14 RP11-477M24 R 14q31.1c(NCI)
 chr14 80Mb   RH44680 AQ635769.1 SP6,
AZ081845.2 T7,
AZ081844.2 SP6,
AQ635783.1*u T7		  
14 RP11-84G6 C 14q31.3~32.1(FHCRC)
 chr14 87Mb   SHGC-799    
14 RP11-477I23 R 14q31.3c(NCI)
 chr14 86Mb   RH78126 AQ634805.1 SP6,
AZ081914.1*u T7,
AZ081918.1*u SP6		  
14 RP11-327L24 R 14q31.3d(NCI)
 chr14 87Mb   RH69803 AZ081943.2 T7,
AZ081942.2 SP6		  
14 CTB-48P8 R 14q32.1(CSMC)
 chr14 95Mb   AFMA238ZE9, EST134924    
14 CTB-55D14 R 14q32.1(CSMC)
 chr14 90Mb   MR13133    
14 CTB-56O7 R 14q32.1(CSMC)
 chr14 95Mb   AFMA238ZE9    
14 RP11-140I4 C 14q32.1(FHCRC)
 chr14 91Mb   SHGC-2854 AQ386607.1 T7  
14 RP11-16O4 C 14q32.1(FHCRC)
 chr14 90Mb   SHGC-1423 B75517.1 T7,
B75516.1 SP6		  
14 RP11-26J5 C 14q32.1(FHCRC)
 chr14 93Mb AC024314.1 SHGC-32639 B84582.1 SP6,
B84583.1 T7		  
14 RP11-28G16 C 14q32.1(FHCRC)
 chr14 91Mb AC016123.2 SHGC-31732 B87285.1 SP6,
B87286.1 T7		  
14 RP11-79J20 C 14q32.1(FHCRC)
 chr14 88Mb AC007263.4 SHGC-20879, SHGC-275 AZ519875.1 T7,
AQ286381.1 T7		  
14 RP11-83I2 C 14q32.1(FHCRC)
       SHGC-13463*u    
14 RP11-99C24 C 14q32.1(FHCRC)
 chr14 89Mb   SHGC-289 AQ323204.1 T7,
AQ323202.1 SP6		  
14 CTB-22M10 R 14q32.1~32.2(CSMC)
 chr14 95Mb   D14S62    
14 CTD-2098M1 C 14q32.1~32.2(FHCRC)
       Hs.66521*u    
14 RP11-188G21 C 14q32.1~32.2(FHCRC)
 chr14 92Mb   SHGC-20882    
14 CTB-40C1 R 14q32(CSMC)
 chr14 100Mb   AFMA346XG9    
14 RP11-121H7 C 14q32(FHCRC)
 chr14 101Mb   SHGC-10966 AQ350989.1*u T7  
14 RP11-374H13 R 14q32.12a~32.12b(NCI)
 chr14 92Mb   Cda0vd04 AZ081829.2 T7,
AZ081836.2 SP6		  
14 RP11-300N18 R 14q32.13b~32.2a(NCI)
 chr14 93Mb   RH17576 AQ504718.1 SP6,
AZ081941.2 SP6,
AZ081980.2 T7,
AQ504720.1 T7		  
14 RP11-483K13 R 14q32.2a(NCI)
 chr14 95Mb   RH10590, A001Y25 AZ081904.3 T7,
AQ637174.1 T7,
AQ637172.1 SP6,
AZ303373.3 SP6		  
14 RP11-111F22 C 14q32.2(FHCRC)
 chr14 98Mb   SHGC-35053 AQ319773.1 SP6  
14 RP11-123M6 C 14q32.2(FHCRC)
 chr14 100Mb AL117190.6 SHGC-34694, SHGC-33378    
14 RP11-128L1 C 14q32.2(FHCRC)
 chr14 99Mb   SHGC-32732    
14 RP11-160P21 C 14q32.2(FHCRC)
 chr14 93Mb   SHGC-12744 AQ377559.1 T7  
14 RP11-80F23 C 14q32.2(FHCRC)
 chr14 95Mb   SHGC-17595 AQ282561.1 T7,
AQ282481.1 SP6		  
14 RP11-86O9 C 14q32.2(FHCRC)
 chr14 99Mb   SHGC-283    
14 RP11-90G22 C 14q32.2(FHCRC)
 chr14 100Mb   SHGC-34694 AQ282742.1 SP6,
AQ282745.1 T7		  
14 RP11-9D19 C 14q32.2~32.3(FHCRC)
 chr14 100Mb AC021765.3*u SHGC-35154, SHGC-33378 B72518.1 T7,
B72517.1*u SP6		  
14 RP11-431B1 R 14q32.2b(NCI)
 chr14 98Mb   stSG35230 AZ081948.2 T7,
AZ081949.2 SP6		  
14 CTA-388D5 R 14q32.3(CSMC)
       CHLC.GGAA3H08*u    
14 CTB-40A12 R 14q32.3(CSMC)
 chr14 103Mb   AFMB025XA9    
14 CTB-40B10 R 14q32.3(CSMC)
 chr14 103Mb   AFMB025XA9    
14 CTB-40B9 R 14q32.3(CSMC)
 chr14 103Mb   AFMB025XA9    
14 CTB-9N5 R 14q32.3(CSMC)
 chr14 103Mb   AFMB025XA9    
14 RP11-502A24 R 14q32.32a(NCI)
 chr14 101Mb   -, A008V18, RH48398*u AZ081840.1*u SP6,
AZ081841.1*u T7		  
14 RP11-454M12 R 14q32.32b(NCI)
 chr14 102Mb   T86307 AZ081843.2 T7,
AQ582808.1 T7,
AZ081842.2*u SP6		  
14 RP11-435F10 R 14q32.33d(NCI)
 chr14 104Mb   RH53818 AZ081951.2 SP6,
AZ081950.2 T7		  
14 CTC-200D12 14qter(UChicago)
       D14S308*u    
total153C:82 R:71 S:0153148 20153102 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.