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    SB81_gp1 polyprotein [ Cosavirus JMY-2014 ]

    Gene ID: 22647400, updated on 16-Aug-2018

    Summary

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    Gene symbol
    SB81_gp1
    Gene description
    polyprotein
    Locus tag
    SB81_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cosavirus JMY-2014 (isolate: Cosa-CHN, nat-host: Homo sapiens)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Cosavirus; unclassified Cosavirus
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    Genomic context

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    Sequence:
    NC_025961.1 (760..7119)

    NC_025961.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_025961.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_025961.1 Reference assembly

      Range
      760..7119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009112712.1 polyprotein [Cosavirus JMY-2014]

      See identical proteins and their annotated locations for YP_009112712.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0A7LTT2
      Conserved Domains (5) summary
      cd00205
      Location:401 → 563
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1491 → 1631
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1127 → 1228
      RNA_helicase; RNA helicase
      cl02808
      Location:1669 → 2097
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl13999
      Location:93 → 304
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    Nucleotide Protein
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