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    LOC4352000 WAT1-related protein At1g09380 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352000, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4352000
    Gene description
    WAT1-related protein At1g09380
    Locus tag
    OSNPB_120288000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 40.6) and flower buds (RPKM 8.6) See more
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    Genomic context

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    See LOC4352000 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (10999072..11004319, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene cysteine desulfurase 1, chloroplastic Neighboring gene protein FAR1-RELATED SEQUENCE 1 Neighboring gene small nucleolar RNA R71 Neighboring gene E3 ubiquitin-protein ligase RGLG2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WAT1-related protein At1g09380
    Names
    Os12g0288000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      10999072..11004319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763568.2 → XP_015619054.1  WAT1-related protein At1g09380 isoform X1

      UniProtKB/TrEMBL
      B8BP65
      Conserved Domains (1) summary
      PLN00411
      Location:31 → 356
      PLN00411; nodulin MtN21 family protein; Provisional

    2. XM_015763571.2 → XP_015619057.1  WAT1-related protein At1g09380 isoform X3

      UniProtKB/TrEMBL
      B8BP65, B9GCQ2, Q2QTP5
      Conserved Domains (1) summary
      PLN00411
      Location:18 → 343
      PLN00411; nodulin MtN21 family protein; Provisional

    3. XM_015763569.2 → XP_015619055.1  WAT1-related protein At1g09380 isoform X2

      UniProtKB/TrEMBL
      B8BP65
      Conserved Domains (1) summary
      PLN00411
      Location:23 → 348
      PLN00411; nodulin MtN21 family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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