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    LOC4330894 metal tolerance protein 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330894, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4330894
    Gene description
    metal tolerance protein 3-like
    Locus tag
    OSNPB_020775100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MTP3; OsMTP3; OsJ_08570; OJ1448_G06.19
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 15.8), flower buds (RPKM 15.1) and 6 other tissues See more
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    Genomic context

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    See LOC4330894 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32720974..32723343)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937807 Neighboring gene uncharacterized LOC112937836 Neighboring gene replication factor C subunit 3-like Neighboring gene uncharacterized LOC4330896

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables manganese ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic cation transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    metal tolerance protein 3
    Names
    LOC_Os02g53490
    putative cation diffusion facilitator 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416948.1 → NP_001403877.1  metal tolerance protein 3

      Status: VALIDATED

      Source sequence(s)
      AK110750, AP014958, AU031217, CI409258
      UniProtKB/Swiss-Prot
      Q0DX45, Q6Z7K5
      UniProtKB/TrEMBL
      A2XA59

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      32720974..32723343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771721.2 → XP_015627207.1  metal tolerance protein 3

      UniProtKB/Swiss-Prot
      Q6Z7K5
      Conserved Domains (1) summary
      COG0053
      Location:102 → 406
      FieF; Divalent metal cation (Fe/Co/Zn/Cd) transporter [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z7K5.1 GenPept UniProtKB/Swiss-Prot:Q6Z7K5

    Gene LinkOut

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