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    LOC4336260 B-box zinc finger protein 24 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336260, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4336260
    Gene description
    B-box zinc finger protein 24
    Locus tag
    OSNPB_040493000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 375.7), roots after flowering (RPKM 358.6) and 4 other tissues See more
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    Genomic context

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    See LOC4336260 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24647989..24649391, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML22 Neighboring gene uncharacterized CRM domain-containing protein At3g25440, chloroplastic Neighboring gene transcription factor bHLH153 Neighboring gene uncharacterized LOC4336262

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Isolation and mapping of a family of putative zinc-finger protein cDNAs from rice. Song J, et al. DNA Res, 1998 Apr 30. PMID 9679197
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photomorphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-box zinc finger protein 24
    Names
    Os04g0493000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24647989..24649391 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780958.2 → XP_015636444.1  B-box zinc finger protein 24

      UniProtKB/TrEMBL
      A0A5S6R6K8, B8ARC3, O82113, Q25AC1, Q7X603, Q7XSB5
      Conserved Domains (1) summary
      cd19821
      Location:58 → 99
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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