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    LOC4336260 B-box zinc finger protein 24 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336260, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4336260
    Gene description
    B-box zinc finger protein 24
    Locus tag
    OSNPB_040493000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 375.7), roots after flowering (RPKM 358.6) and 4 other tissues See more
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    Genomic context

    See LOC4336260 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24647989..24649391, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML22 Neighboring gene uncharacterized CRM domain-containing protein At3g25440, chloroplastic Neighboring gene transcription factor bHLH153 Neighboring gene uncharacterized LOC4336262

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in photomorphogenesis IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    B-box zinc finger protein 24
    Names
    Os04g0493000

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24647989..24649391 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780958.2XP_015636444.1  B-box zinc finger protein 24

      UniProtKB/TrEMBL
      A0A5S6R6K8, B8ARC3, O82113, Q25AC1, Q7X603, Q7XSB5
      Conserved Domains (1) summary
      cd19821
      Location:5899
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins