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ybcK putative recombinase YbcK [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945166, updated on 4-Apr-2024

Summary

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Gene symbol
ybcK
Gene description
putative recombinase YbcK
Primary source
ASAP:ABE-0001866
Locus tag
b0544
See related
ECOCYC:G6300
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0535
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Genomic context

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Sequence:
NC_000913.3 (568902..570428)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene multidrug/betaine/choline efflux transporter EmrE Neighboring gene protein YlcJ Neighboring gene periplasmic protein YbcL Neighboring gene putative DNA-binding transcriptional regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA strand exchange activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA strand exchange activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA recombination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative recombinase YbcK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    568902..570428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415076.1 putative recombinase YbcK [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415076.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7A7A2L7
    Conserved Domains (3) summary
    cd00338
    Location:6 → 153
    Ser_Recombinase; Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining ...
    pfam07508
    Location:191 → 284
    Recombinase
    pfam13408
    Location:302 → 358
    Zn_ribbon_recom; Recombinase zinc beta ribbon domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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