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MEF8S Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829380, updated on 15-Feb-2024

Summary

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Gene symbol
MEF8S
Gene description
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
Araport:AT4G32450
Locus tag
AT4G32450
See related
TAIR:AT4G32450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8B4.150; F8B4_150; MEF8 similar
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Genomic context

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See MEF8S in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (15660927..15662879)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Plant Tudor-like RNA-binding protein Neighboring gene miscRNA Neighboring gene choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) Neighboring gene Cytochrome bd ubiquinol oxidase, 14kDa subunit Neighboring gene tRNA-Gly

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two related RNA-editing proteins target the same sites in mitochondria of Arabidopsis thaliana. Verbitskiy D, et al. J Biol Chem, 2012 Nov 2. PMID 22977245, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119397.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_194971.1
  • Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G25580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15660927..15662879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119397.2 → NP_194971.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194971.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q680T6, Q9SUU7
    UniProtKB/TrEMBL
    A0A178UYN4, A0A654FUW3
    Conserved Domains (2) summary
    PLN03081
    Location:160 → 537
    PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
    sd00004
    Location:253 → 276
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SUU7.1

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