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AT3G49000 RNA polymerase III subunit RPC82 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824061, updated on 15-Feb-2024

Summary

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Gene symbol
AT3G49000
Gene description
RNA polymerase III subunit RPC82 family protein
Primary source
Araport:AT3G49000
Locus tag
AT3G49000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See AT3G49000 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (18162560..18165986)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene O-glucosyltransferase rumi-like protein (DUF821) Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene miscRNA Neighboring gene breast basic conserved 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_114759.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA polymerase III subunit RPC82 family protein
NP_566914.1
  • RNA polymerase III subunit RPC82 family protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III subunit RPC82-related, helix-turn-helix (InterPro:IPR013197), RNA polymerase III Rpc82, C -terminal (InterPro:IPR008806); Has 265 Blast hits to 257 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 106; Fungi - 69; Plants - 57; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18162560..18165986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114759.4 → NP_566914.1  RNA polymerase III subunit RPC82 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566914.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHG8, A0A384KQ15, A0A5S9XJ37, A0A7G2EWC9, Q8LPK6
    Conserved Domains (2) summary
    pfam05645
    Location:150 → 364
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:10 → 70
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain
Nucleotide Protein
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