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2410004B18Rik RIKEN cDNA 2410004B18 gene [ Mus musculus (house mouse) ]

Gene ID: 66421, updated on 5-Mar-2024

Summary

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Official Symbol
2410004B18Rikprovided by MGI
Official Full Name
RIKEN cDNA 2410004B18 geneprovided by MGI
Primary source
MGI:MGI:1913671
See related
Ensembl:ENSMUSG00000036873 AllianceGenome:MGI:1913671
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930572C24Rik
Summary
Predicted to be located in nucleoplasm. Is expressed in liver; retina inner nuclear layer; retina nuclear layer; and retina outer nuclear layer. Orthologous to human C1orf52 (chromosome 1 open reading frame 52). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 15.2), CNS E14 (RPKM 12.3) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See 2410004B18Rik in Genome Data Viewer
Location:
3 H2; 3 71.03 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (145643769..145650584)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (145938014..145944829)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene dimethylarginine dimethylaminohydrolase 1 Neighboring gene ribosomal protein L36A, pseudogene 2 Neighboring gene predicted gene, 35187 Neighboring gene STARR-positive B cell enhancer mm9_chr3:145568448-145568748 Neighboring gene STARR-positive B cell enhancer ABC_E35 Neighboring gene STARR-positive B cell enhancer ABC_E6142 Neighboring gene STARR-positive B cell enhancer ABC_E11228 Neighboring gene STARR-positive B cell enhancer ABC_E336 Neighboring gene STARR-positive B cell enhancer ABC_E9228 Neighboring gene B cell leukemia/lymphoma 10 Neighboring gene VISTA enhancer mm311 Neighboring gene STARR-positive B cell enhancer mm9_chr3:145651862-145652162 Neighboring gene predicted gene, 35352 Neighboring gene STARR-seq mESC enhancer starr_09212 Neighboring gene synapse defective 1, Rho GTPase, homolog 2 (C. elegans) Neighboring gene predicted gene, 40166

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Prediction of Gene Activity in Early B Cell Development Based on an Integrative Multi-Omics Analysis. Heydarian M, et al. J Proteomics Bioinform, 2014 Feb 17. PMID 25544807, Free PMC Article
  2. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
  3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC144272

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
UPF0690 protein C1orf52 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356284.1 → NP_001343213.1  UPF0690 protein C1orf52 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC123684
    Conserved Domains (1) summary
    pfam15559
    Location:33 → 125
    DUF4660; Domain of unknown function (DUF4660)

  2. NM_025555.5 → NP_079831.1  UPF0690 protein C1orf52 homolog isoform 1

    See identical proteins and their annotated locations for NP_079831.1

    Status: VALIDATED

    Source sequence(s)
    AC123684
    Consensus CDS
    CCDS17898.1
    UniProtKB/Swiss-Prot
    Q9CRP5, Q9CWU4
    Related
    ENSMUSP00000045376.8, ENSMUST00000039571.14
    Conserved Domains (1) summary
    pfam15559
    Location:33 → 125
    DUF4660; Domain of unknown function (DUF4660)

RNA

  1. NR_151445.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC123684, AK077565
    Related
    ENSMUST00000134575.8

  2. NR_151446.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC123684, AW124724

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    145643769..145650584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CWU4.1 GenPept UniProtKB/Swiss-Prot:Q9CWU4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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