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CHLRE_09g396600v5 uncharacterized protein [ Chlamydomonas reinhardtii ]

Gene ID: 5720168, updated on 7-Dec-2023

Summary

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Gene symbol
CHLRE_09g396600v5
Gene description
uncharacterized protein
Primary source
Phytozome:Cre09.g396600
Locus tag
CHLRE_09g396600v5
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Chlamydomonas reinhardtii (strain: CC-503 cw92 mt+)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; CS clade; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Old locus tag
CHLREDRAFT_24189
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Genomic context

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See CHLRE_09g396600v5 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
10
Sequence:
Chromosome: 9; NC_057012.1 (1740957..1745328, complement)

Chromosome 9 - NC_057012.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057012.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Brownian dynamics and molecular dynamics study of the association between hydrogenase and ferredoxin from Chlamydomonas reinhardtii. Long H, et al. Biophys J, 2008 Oct. PMID 18621810, Free PMC Article
  2. Microoxic Niches within the Thylakoid Stroma of Air-Grown Chlamydomonas reinhardtii Protect [FeFe]-Hydrogenase and Support Hydrogen Production under Fully Aerobic Environment. Liran O, et al. Plant Physiol, 2016 Sep. PMID 27443604, Free PMC Article
  3. Genetic disruption of both Chlamydomonas reinhardtii [FeFe]-hydrogenases: Insight into the role of HYDA2 in H₂ production. Meuser JE, et al. Biochem Biophys Res Commun, 2012 Jan 13. PMID 22177948
  4. Function of the chloroplast hydrogenase in the microalga Chlamydomonas: the role of hydrogenase and state transitions during photosynthetic activation in anaerobiosis. Ghysels B, et al. PLoS One, 2013. PMID 23717558, Free PMC Article
  5. RNA silencing of hydrogenase(-like) genes and investigation of their physiological roles in the green alga Chlamydomonas reinhardtii. Godman JE, et al. Biochem J, 2010 Nov 1. PMID 20726841

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show that an anaerobic locality in the chloroplast preserves [FeFe]-hydrogenase activity and supports continuous hydrogen production
    Title: Microoxic Niches within the Thylakoid Stroma of Air-Grown Chlamydomonas reinhardtii Protect [FeFe]-Hydrogenase and Support Hydrogen Production under Fully Aerobic Environment.
  2. Hydrogenase activity and state transition ability are both critical for activation of photosynthesis in the absence of O2oxygen
    Title: Function of the chloroplast hydrogenase in the microalga Chlamydomonas: the role of hydrogenase and state transitions during photosynthetic activation in anaerobiosis.
  3. the contribution of HYDA2 to H(2) photoproduction is approximately 25% that of HYDA1, which corresponds to similarly low levels of in vitro hydrogenase activity measured in the hydA1-1 mutant.
    Title: Genetic disruption of both Chlamydomonas reinhardtii [FeFe]-hydrogenases: Insight into the role of HYDA2 in H₂ production.
  4. silencing of HydA2 or HYD3 did not affect hydrogen production.
    Title: RNA silencing of hydrogenase(-like) genes and investigation of their physiological roles in the green alga Chlamydomonas reinhardtii.
  5. Several important hydrogenase-ferredoxin encounter complexes were identified from, which were then individually simulated using atomistic molecular dynamics to provide more details of the hydrogenase and ferredoxin interaction.[
    Title: Brownian dynamics and molecular dynamics study of the association between hydrogenase and ferredoxin from Chlamydomonas reinhardtii.
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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_057012.1 Reference assembly

    Range
    1740957..1745328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001694451.2 → XP_001694503.1  uncharacterized protein CHLRE_09g396600v5 [Chlamydomonas reinhardtii]

    See identical proteins and their annotated locations for XP_001694503.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q6T532, Q8VZZ0
    Conserved Domains (2) summary
    pfam02256
    Location:446 → 498
    Fe_hyd_SSU; Iron hydrogenase small subunit
    cl27324
    Location:75 → 441
    Fe_hyd_lg_C; Iron only hydrogenase large subunit, C-terminal domain
Nucleotide Protein
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