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runx2b RUNX family transcription factor 2b [ Takifugu rubripes (torafugu) ]

Gene ID: 445986, updated on 5-Mar-2024

Summary

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Gene symbol
runx2b
Gene description
RUNX family transcription factor 2b
See related
Ensembl:ENSTRUG00000003501
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
runx2
Orthologs
zebrafish all
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Genomic context

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See runx2b in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 16 NC_042300.1 (5532270..5567763, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 16 NC_018905.1 (3229609..3262572, complement)

Chromosome 16 - NC_042300.1Genomic Context describing neighboring genes Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 5 Neighboring gene chloride intracellular channel 5b Neighboring gene opsin 8, group member a Neighboring gene opsin 8, group member b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic characterization of the RUNX2 gene of Fugu rubripes. Eggers JH, et al. Gene, 2002 May 29. PMID 12095689
  2. cDNA cloning of Runx family genes from the pufferfish (Fugu rubripes). Ng CE, et al. Gene, 2007 Sep 15. PMID 17604919

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemopoiesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
runt-related transcription factor 2
Names
RUNX family transcription factor 2
runt related transcription factor 2
transcription factor Cbfa1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032643.2 → NP_001027815.1  runt-related transcription factor 2

    See identical proteins and their annotated locations for NP_001027815.1

    Status: PROVISIONAL

    Source sequence(s)
    AB280006
    UniProtKB/TrEMBL
    H2S749, Q6Q2P8, Q8JFD4
    Related
    ENSTRUP00000008221.2, ENSTRUT00000008269.3
    Conserved Domains (2) summary
    pfam00853
    Location:75 → 196
    Runt; Runt domain
    pfam08504
    Location:371 → 463
    RunxI; Runx inhibition domain

RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042300.1 Reference fTakRub1.2 Primary Assembly

    Range
    5532270..5567763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029849085.1 → XP_029704945.1  runt-related transcription factor 2 isoform X1

    UniProtKB/TrEMBL
    H2S749, Q6Q2P8, Q8JFD4
    Related
    ENSTRUP00000087938.1, ENSTRUT00000085642.1
    Conserved Domains (2) summary
    pfam00853
    Location:75 → 196
    Runt; Runt domain
    pfam08504
    Location:371 → 463
    RunxI; Runx inhibition domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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