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raraa retinoic acid receptor, alpha a [ Takifugu rubripes (torafugu) ]

Gene ID: 445948, updated on 5-Mar-2024

Summary

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Gene symbol
raraa
Gene description
retinoic acid receptor, alpha a
See related
Ensembl:ENSTRUG00000016415
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
rara; nr1b1
Orthologs
human zebrafish all
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Genomic context

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See raraa in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 1 NC_042285.1 (11161788..11258008, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 1 NC_018890.1 (7465917..7495126, complement)

Chromosome 1 - NC_042285.1Genomic Context describing neighboring genes Neighboring gene terminal uridylyl transferase 1, U6 snRNA-specific Neighboring gene marker of proliferation Ki-67 Neighboring gene uncharacterized LOC115246550 Neighboring gene uncharacterized LOC115246552 Neighboring gene gap junction protein delta 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation and characterisation of the retinoic acid receptor-alpha gene in the Japanese pufferfish, F. rubripes. Wentworth JM, et al. Gene, 1999 Aug 20. PMID 10452951
  2. Comparison of the expression patterns of newly identified zebrafish retinoic acid and retinoid X receptors. Waxman JS, et al. Dev Dyn, 2007 Feb. PMID 17195188

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor alpha
Names
RAR-alpha
nuclear receptor subfamily 1 group B member 1
retinoic acid receptor alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032753.1 → NP_001027925.1  retinoic acid receptor alpha

    See identical proteins and their annotated locations for NP_001027925.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ012379
    UniProtKB/TrEMBL
    A0A674NQ35
    Related
    ENSTRUP00000041965.3, ENSTRUT00000042109.3
    Conserved Domains (2) summary
    cd06937
    Location:186 → 415
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:81 → 165
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042285.1 Reference fTakRub1.2 Primary Assembly

    Range
    11161788..11258008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029826335.1 → XP_029682195.1  retinoic acid receptor alpha isoform X1

    UniProtKB/Swiss-Prot
    Q9W5Z3, Q9W5Z4
    UniProtKB/TrEMBL
    A0A674NQ35
    Related
    ENSTRUP00000041963.2, ENSTRUT00000042107.3
    Conserved Domains (2) summary
    cd06937
    Location:179 → 408
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:74 → 158
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W5Z3.1 GenPept UniProtKB/Swiss-Prot:Q9W5Z3

Gene LinkOut

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Molecular Biology Databases
Research Materials